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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034237 through 18771 annotations produced 1 hits



eIF3-S9 (eIF3-S9):

Annotation Number : CG4878
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034237
Gbrowse : chr2R:13423717-13426608 (+) // 100.0 //
Probeset : 1633209_s_at
Accessions : protein= NP_611228; /// NP_725691;, nucleotide= NM_137384; /// NM_166239;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structur
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0034237.
BDGP gene expression has embryonic in situ data for eIF3-S9: 11 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0034237 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain841 254 of 4 0.60Down
Head1195 264 of 4 0.80Down
Eye1025 94 of 4 0.70Down
Thoracicoabdominal ganglion1067 364 of 4 0.70Down
Salivary gland2006 564 of 4 1.38Up
Crop1681 134 of 4 1.20Up
Midgut967 274 of 4 0.70Down
Tubule1554 874 of 4 1.10None
Hindgut1641 444 of 4 1.10None
Heart1297 264 of 4 0.89None
Fat body2340 2284 of 4 1.60Up
Ovary1715 414 of 4 1.20Up
Testis503 74 of 4 0.30Down
Male accessory glands4358 614 of 4 3.00Up
Virgin spermatheca2584 414 of 4 1.77Up
Mated spermatheca2564 1084 of 4 1.76Up
Adult carcass1240 384 of 4 0.90Down
Larval CNS1552 684 of 4 1.06None
Larval Salivary gland2818 684 of 4 1.93Up
Larval midgut1006 194 of 4 0.69Down
Larval tubule1964 614 of 4 1.30Up
Larval hindgut2291 694 of 4 1.57Up
Larval fat body1726 1674 of 4 1.20None
Larval trachea1797 734 of 4 1.23Up
Larval carcass1945 934 of 4 1.33Up
S2 cells (growing)2114 144 of 4 1.45Up
Whole fly1458 614 of 4

Looking for FBgn0034237. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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