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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034240 through 18771 annotations produced 1 hits



Misexpression suppressor of ras 4 (MESR4):

Annotation Number : CG4903
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034240
Gbrowse : chr2R:13436314-13443159 (+) // 100.0 //
Probeset : 1633878_at
Accessions : protein= NP_001097359; /// NP_523775;, nucleotide= NM_001103889; /// NM_079051;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from e
FlyMine data for FBgn0034240.
BDGP gene expression has embryonic in situ data for MESR4: 21 pix of staining in 17 body parts.
Homophila reports that CG4903 is a close match (5e-11) to human gene ING1 (NP_937862), a gene associated with Squamous cell carcinoma, head and neck, 275355 (3).
BioGrid reports that CG4903 interacts with CG5460 CG5460 CG9375 CG3936 .
TRiP has 1 RNAi stocks for FBgn0034240 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034240 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 34 of 4 1.40Up
Head42 44 of 4 0.70Down
Eye41 14 of 4 0.65Down
Thoracicoabdominal ganglion63 34 of 4 1.00None
Salivary gland61 42 of 4 0.97None
Crop55 24 of 4 0.90None
Midgut28 11 of 4 0.50Down
Tubule25 13 of 4 0.40Down
Hindgut46 14 of 4 0.70None
Heart35 24 of 4 0.56Down
Fat body22 50 of 4 0.36Down
Ovary206 54 of 4 3.30Up
Testis44 14 of 4 0.70None
Male accessory glands59 24 of 4 0.90None
Virgin spermatheca19 21 of 4 0.31Down
Mated spermatheca23 41 of 4 0.38Down
Adult carcass52 44 of 4 0.80None
Larval CNS114 74 of 4 1.81Up
Larval Salivary gland73 21 of 4 1.16None
Larval midgut26 20 of 4 0.41Down
Larval tubule35 14 of 4 0.60Down
Larval hindgut49 34 of 4 0.78None
Larval fat body33 62 of 4 0.50Down
Larval trachea67 74 of 4 1.07None
Larval carcass51 34 of 4 0.82None
S2 cells (growing)141 34 of 4 2.24Up
Whole fly63 64 of 4

Looking for FBgn0034240. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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