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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034247 through 18771 annotations produced 1 hits



/// (CG6484 /// DsecCG6484):

Annotation Number : CG6484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034247
Gbrowse : chr2R:13469416-13471514 (-) // 100.0 //
Probeset : 1626734_at
Accessions : protein= NP_611234;, nucleotide= NM_137390;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005355 // glucose transmembrane transporter
FlyMine data for FBgn0034247.
BDGP gene expression has embryonic in situ data for CG6484: 13 pix of staining in 2 body parts.
Homophila reports that CG6484 is a close match (1e-32) to human gene SLC2A4;GLUT4 (NP_001033), a gene associated with {Diabetes mellitus, noninsulin-dependent} (3).
VDRC has 2 RNAi stocks for FBgn0034247 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 03 of 4 0.00Down
Head22 14 of 4 0.10Down
Eye5 21 of 4 0.03Down
Thoracicoabdominal ganglion4 00 of 4 0.00Down
Salivary gland4 30 of 4 0.03Down
Crop6 21 of 4 0.00Down
Midgut2738 784 of 415.40Up
Tubule11 03 of 4 0.10Down
Hindgut31 14 of 4 0.20Down
Heart202 534 of 4 1.13None
Fat body317 354 of 4 1.78Up
Ovary3 00 of 4 0.00Down
Testis8 03 of 4 0.00Down
Male accessory glands522 344 of 4 2.90Up
Virgin spermatheca708 284 of 4 3.98Up
Mated spermatheca434 594 of 4 2.44Up
Adult carcass160 54 of 4 0.90None
Larval CNS4 02 of 4 0.02Down
Larval Salivary gland3 21 of 4 0.02Down
Larval midgut149 174 of 4 0.84None
Larval tubule7 11 of 4 0.00Down
Larval hindgut4 01 of 4 0.02Down
Larval fat body5 20 of 4 0.00Down
Larval trachea3 30 of 4 0.02Down
Larval carcass3 00 of 4 0.02Down
S2 cells (growing)2 00 of 4 0.01Down
Whole fly178 254 of 4

Looking for FBgn0034247. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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