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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034249 through 18771 annotations produced 1 hits



RhoGAP54D (RhoGAP54D):

Annotation Number : CG6477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034249
Gbrowse : chr2R:13474175-13478387 (-) // 100.0 //
Probeset : 1625119_at
Accessions : protein= NP_611236; /// NP_995878;, nucleotide= NM_137392; /// NM_206156;
Pathway : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0034249.
BioGrid reports that CG6477 interacts with CG6819 CG7399 CG8529 CG9418 .
TRiP has 1 RNAi stocks for FBgn0034249 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034249 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 03 of 4 0.20Down
Head6 10 of 4 0.10Down
Eye5 00 of 4 0.09Down
Thoracicoabdominal ganglion9 03 of 4 0.20Down
Salivary gland10 20 of 4 0.18Down
Crop6 10 of 4 0.10Down
Midgut28 14 of 4 0.50Down
Tubule6 01 of 4 0.10Down
Hindgut8 00 of 4 0.10Down
Heart3 10 of 4 0.06Down
Fat body13 23 of 4 0.24Down
Ovary168 44 of 4 3.00Up
Testis34 14 of 4 0.60Down
Male accessory glands4 21 of 4 0.10Down
Virgin spermatheca7 02 of 4 0.14Down
Mated spermatheca9 11 of 4 0.16Down
Adult carcass9 10 of 4 0.20Down
Larval CNS80 74 of 4 1.41Up
Larval Salivary gland5 10 of 4 0.09Down
Larval midgut12 21 of 4 0.22Down
Larval tubule8 11 of 4 0.20Down
Larval hindgut13 12 of 4 0.24Down
Larval fat body15 22 of 4 0.30Down
Larval trachea23 34 of 4 0.41Down
Larval carcass17 13 of 4 0.30Down
S2 cells (growing)83 34 of 4 1.47Up
Whole fly57 44 of 4

Looking for FBgn0034249. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime