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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034251 through 18771 annotations produced 1 hits



NADH:ubiquinone oxidoreductase 51 kDa subunit (CG11423):

Annotation Number : CG11423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034251
Gbrowse : chr2R:13482771-13484897 (+) // 100.0 //
Probeset : 1637871_at
Accessions : protein= NP_611238;, nucleotide= NM_137394;
Pathway : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
Interpro : "0008137 // NADH dehydrogenase (ubiquinone) activity // inferred from sequence or structural similarity /// 0008137 // N
FlyMine data for FBgn0034251.
Homophila reports that CG11423 is a close match (0) to human gene NDUFV1;UQOR1 (NP_009034), a gene associated with Alexander disease, 203450 (3);Leigh syndrome, 256000 (3);Mitochondrial complex I deficiency, 252010 (3).
VDRC has 2 RNAi stocks for FBgn0034251 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 ± 10 of 4 0.70None
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.28Down
Crop2 ± 00 of 4 0.20Down
Midgut4 ± 20 of 4 0.30Down
Tubule7 ± 10 of 4 0.50Down
Hindgut6 ± 20 of 4 0.40Down
Heart1 ± 00 of 4 0.07Down
Fat body0 ± 00 of 4 0.05Down
Ovary0 ± 00 of 4 0.00Down
Testis302 ± 54 of 419.50Up
Male accessory glands8 ± 20 of 4 0.50None
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.08Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.22Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.14Down
Larval fat body21 ± 131 of 4 1.40None
Larval trachea2 ± 20 of 4 0.13Down
Larval carcass1 ± 00 of 4 0.13Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly15 ± 10 of 4

Looking for FBgn0034251. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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