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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034253 through 18771 annotations produced 1 hits



(CG10936):

Annotation Number : CG10936
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034253
Gbrowse : chr2R:13492455-13526639 (-) // 100.0 //
Probeset : 1639703_s_at
Accessions : protein= NP_611239; /// NP_725702;, nucleotide= NM_137395; /// NM_166242;
FlyMine data for FBgn0034253.
BDGP gene expression has embryonic in situ data for CG10936: 16 pix of staining in 8 body parts.
VDRC has 2 RNAi stocks for FBgn0034253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 00 of 4 0.30Down
Head15 03 of 4 0.60None
Eye18 14 of 4 0.77None
Thoracicoabdominal ganglion5 12 of 4 0.20Down
Salivary gland18 60 of 4 0.80None
Crop25 43 of 4 1.10None
Midgut5 10 of 4 0.20Down
Tubule4 00 of 4 0.20Down
Hindgut21 23 of 4 0.90None
Heart9 03 of 4 0.41Down
Fat body21 102 of 4 0.90None
Ovary21 14 of 4 0.90None
Testis38 24 of 4 1.60Up
Male accessory glands15 43 of 4 0.70None
Virgin spermatheca25 04 of 4 1.06None
Mated spermatheca20 33 of 4 0.86None
Adult carcass32 23 of 4 1.40None
Larval CNS10 04 of 4 0.45Down
Larval Salivary gland12 32 of 4 0.53None
Larval midgut25 24 of 4 1.07None
Larval tubule5 10 of 4 0.20Down
Larval hindgut91 44 of 4 3.87Up
Larval fat body12 21 of 4 0.50Down
Larval trachea308 304 of 413.07Up
Larval carcass506 154 of 421.49Up
S2 cells (growing)8 11 of 4 0.38Down
Whole fly23 34 of 4

Looking for FBgn0034253. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime