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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034255 through 18771 annotations produced 1 hits



(CG18186):

Annotation Number : CG18186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034255
Gbrowse : chr2R:13521366-13521621 (-) // 100.0 //
Probeset : 1636001_at
Accessions : protein= NP_611240;, nucleotide= NM_137396;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from electronic annotation
FlyMine data for FBgn0034255.
VDRC has 2 RNAi stocks for FBgn0034255 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.10Down
Head5 ± 00 of 4 0.10Down
Eye17 ± 22 of 4 0.30Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.05Down
Crop22 ± 31 of 4 0.40Down
Midgut2 ± 10 of 4 0.00Down
Tubule4 ± 10 of 4 0.10Down
Hindgut31 ± 34 of 4 0.50Down
Heart11 ± 41 of 4 0.20Down
Fat body4 ± 30 of 4 0.08Down
Ovary98 ± 24 of 4 1.70Up
Testis3 ± 10 of 4 0.10Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.06Down
Adult carcass10 ± 20 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut2 ± 00 of 4 0.03Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.05Down
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea7 ± 10 of 4 0.13Down
Larval carcass2 ± 00 of 4 0.04Down
S2 cells (growing)371 ± 74 of 4 6.41Up
Whole fly57 ± 74 of 4

Looking for FBgn0034255. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime