FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034258 through 18771 annotations produced 1 hits

eIF3-S8 (eIF3-S8):

Annotation Number : CG4954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034258
Gbrowse : chr2R:13553182-13556749 (+) // 100.0 //
Probeset : 1637193_at
Accessions : protein= NP_611242;, nucleotide= NM_137398;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structur
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0034258.
BioGrid reports that CG4954 interacts with CG8316 CG9911 .
VDRC has 2 RNAi stocks for FBgn0034258 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	259 ± 2	4 of 4	0.60	Down
Head	338 ± 10	4 of 4	0.80	Down
Eye	419 ± 10	4 of 4	0.96	None
Thoracicoabdominal ganglion	357 ± 6	4 of 4	0.80	Down
Salivary gland	1071 ± 25	4 of 4	2.45	Up
Crop	523 ± 7	4 of 4	1.20	Up
Midgut	350 ± 3	4 of 4	0.80	Down
Tubule	326 ± 23	4 of 4	0.70	Down
Hindgut	493 ± 15	4 of 4	1.10	Up
Heart	539 ± 16	4 of 4	1.23	Up
Fat body	766 ± 78	4 of 4	1.75	Up
Ovary	524 ± 7	4 of 4	1.20	Up
Testis	128 ± 7	4 of 4	0.30	Down
Male accessory glands	1445 ± 59	4 of 4	3.30	Up
Virgin spermatheca	1297 ± 26	4 of 4	2.97	Up
Mated spermatheca	1311 ± 23	4 of 4	3.00	Up
Adult carcass	450 ± 20	4 of 4	1.00	None
Larval CNS	666 ± 24	4 of 4	1.52	Up
Larval Salivary gland	803 ± 31	4 of 4	1.84	Up
Larval midgut	364 ± 9	4 of 4	0.83	Down
Larval tubule	757 ± 29	4 of 4	1.70	Up
Larval hindgut	751 ± 5	4 of 4	1.72	Up
Larval fat body	633 ± 69	4 of 4	1.40	None
Larval trachea	701 ± 47	4 of 4	1.60	Up
Larval carcass	693 ± 33	4 of 4	1.59	Up
S2 cells (growing)	1191 ± 11	4 of 4	2.72	Up
Whole fly	437 ± 15	4 of 4

Looking for FBgn0034258. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720