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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034258 through 18771 annotations produced 1 hits



eIF3-S8 (eIF3-S8):

Annotation Number : CG4954
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034258
Gbrowse : chr2R:13553182-13556749 (+) // 100.0 //
Probeset : 1637193_at
Accessions : protein= NP_611242;, nucleotide= NM_137398;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structur
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0034258.
BioGrid reports that CG4954 interacts with CG8316 CG9911 .
VDRC has 2 RNAi stocks for FBgn0034258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain259 24 of 4 0.60Down
Head338 104 of 4 0.80Down
Eye419 104 of 4 0.96None
Thoracicoabdominal ganglion357 64 of 4 0.80Down
Salivary gland1071 254 of 4 2.45Up
Crop523 74 of 4 1.20Up
Midgut350 34 of 4 0.80Down
Tubule326 234 of 4 0.70Down
Hindgut493 154 of 4 1.10Up
Heart539 164 of 4 1.23Up
Fat body766 784 of 4 1.75Up
Ovary524 74 of 4 1.20Up
Testis128 74 of 4 0.30Down
Male accessory glands1445 594 of 4 3.30Up
Virgin spermatheca1297 264 of 4 2.97Up
Mated spermatheca1311 234 of 4 3.00Up
Adult carcass450 204 of 4 1.00None
Larval CNS666 244 of 4 1.52Up
Larval Salivary gland803 314 of 4 1.84Up
Larval midgut364 94 of 4 0.83Down
Larval tubule757 294 of 4 1.70Up
Larval hindgut751 54 of 4 1.72Up
Larval fat body633 694 of 4 1.40None
Larval trachea701 474 of 4 1.60Up
Larval carcass693 334 of 4 1.59Up
S2 cells (growing)1191 114 of 4 2.72Up
Whole fly437 154 of 4

Looking for FBgn0034258. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime