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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034262 through 18771 annotations produced 1 hits

swi2 (swi2):

Annotation Number : CG14485
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034262
Gbrowse : chr2R:13577778-13582856 (-) // 100.0 //
Probeset : 1628930_at
Accessions : protein= NP_611247;, nucleotide= NM_137403;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0034262.
TRiP has 1 RNAi stocks for FBgn0034262 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 54 of 4 1.50Up
Head28 64 of 4 0.80None
Eye16 14 of 4 0.47Down
Thoracicoabdominal ganglion56 44 of 4 1.60Up
Salivary gland46 14 of 4 1.29None
Crop31 34 of 4 0.90None
Midgut18 04 of 4 0.50Down
Tubule684 434 of 419.10Up
Hindgut694 104 of 419.40Up
Heart11 14 of 4 0.32Down
Fat body39 134 of 4 1.10None
Ovary22 14 of 4 0.60None
Testis14 14 of 4 0.40Down
Male accessory glands22 43 of 4 0.60None
Virgin spermatheca15 24 of 4 0.42Down
Mated spermatheca14 24 of 4 0.39Down
Adult carcass15 33 of 4 0.40Down
Larval CNS27 34 of 4 0.76None
Larval Salivary gland80 114 of 4 2.24Up
Larval midgut15 23 of 4 0.42Down
Larval tubule334 154 of 4 9.30Up
Larval hindgut774 834 of 421.58Up
Larval fat body31 24 of 4 0.90None
Larval trachea6 12 of 4 0.19Down
Larval carcass25 44 of 4 0.72None
S2 cells (growing)7 03 of 4 0.20Down
Whole fly35 44 of 4

Looking for FBgn0034262. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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