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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034264 through 18771 annotations produced 1 hits


Annotation Number : CG10933
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034264
Gbrowse : chr2R:13610817-13612358 (+) // 100.0 //
Probeset : 1638211_at
Accessions : protein= NP_611251;, nucleotide= NM_137407;
FlyMine data for FBgn0034264.
BDGP gene expression has embryonic in situ data for CG10933: 4 pix of staining in 1 body parts.
BioGrid reports that CG10933 interacts with CG6945 .
TRiP has 1 RNAi stocks for FBgn0034264 available for purchase.
VDRC has 5 RNAi stocks for FBgn0034264 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30Down
Head20 04 of 4 2.20Up
Eye43 14 of 4 4.71Up
Thoracicoabdominal ganglion3 10 of 4 0.30Down
Salivary gland5 20 of 4 0.63None
Crop67 24 of 4 7.30Up
Midgut4 10 of 4 0.50Down
Tubule6 00 of 4 0.70Down
Hindgut39 14 of 4 4.30Up
Heart1 00 of 4 0.11Down
Fat body6 30 of 4 0.68None
Ovary1 00 of 4 0.20Down
Testis7 11 of 4 0.80None
Male accessory glands3 10 of 4 0.30Down
Virgin spermatheca4 00 of 4 0.47Down
Mated spermatheca8 11 of 4 0.90None
Adult carcass20 32 of 4 2.20Up
Larval CNS63 64 of 4 6.92Up
Larval Salivary gland8 10 of 4 0.89None
Larval midgut6 10 of 4 0.72None
Larval tubule2 00 of 4 0.30Down
Larval hindgut65 34 of 4 7.16Up
Larval fat body9 30 of 4 1.00None
Larval trachea148 74 of 416.17Up
Larval carcass61 44 of 4 6.71Up
S2 cells (growing)3 00 of 4 0.33Down
Whole fly9 12 of 4

Looking for FBgn0034264. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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