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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034265 through 18771 annotations produced 1 hits



(CG6410):

Annotation Number : CG6410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034265
Gbrowse : chr2R:13612874-13614305 (-) // 100.0 //
Probeset : 1630224_at
Accessions : protein= NP_611252;, nucleotide= NM_137408;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0035091 // phosphoinositide binding // inferred fr
FlyMine data for FBgn0034265.
BDGP gene expression has embryonic in situ data for CG6410: 4 pix of staining in 1 body parts.
BioGrid reports that CG6410 interacts with CG9207 CG8292 .
TRiP has 1 RNAi stocks for FBgn0034265 available for purchase.
VDRC has 5 RNAi stocks for FBgn0034265 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 14 of 4 0.40Down
Head42 ± 24 of 4 0.50Down
Eye32 ± 34 of 4 0.38Down
Thoracicoabdominal ganglion25 ± 14 of 4 0.30Down
Salivary gland87 ± 74 of 4 1.03None
Crop73 ± 64 of 4 0.90None
Midgut68 ± 44 of 4 0.80Down
Tubule41 ± 24 of 4 0.50Down
Hindgut73 ± 24 of 4 0.90Down
Heart33 ± 34 of 4 0.40Down
Fat body36 ± 24 of 4 0.44Down
Ovary176 ± 54 of 4 2.10Up
Testis20 ± 14 of 4 0.20Down
Male accessory glands84 ± 54 of 4 1.00None
Virgin spermatheca35 ± 44 of 4 0.42Down
Mated spermatheca29 ± 24 of 4 0.34Down
Adult carcass46 ± 34 of 4 0.60Down
Larval CNS32 ± 34 of 4 0.39Down
Larval Salivary gland104 ± 114 of 4 1.25None
Larval midgut59 ± 34 of 4 0.71Down
Larval tubule144 ± 44 of 4 1.70Up
Larval hindgut65 ± 34 of 4 0.78Down
Larval fat body65 ± 24 of 4 0.80Down
Larval trachea75 ± 94 of 4 0.90None
Larval carcass57 ± 44 of 4 0.69Down
S2 cells (growing)71 ± 14 of 4 0.85Down
Whole fly84 ± 34 of 4

Looking for FBgn0034265. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime