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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034267 through 18771 annotations produced 2 hits



/// (CG4975 /// CG4984):

Annotation Number : CG4984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034266 /// FBgn0034267
Gbrowse : chr2R:13616469-13620494 (+) // 100.0 //
Probeset : 1628766_at
Accessions : protein= NP_001137693; /// NP_001137694; /// NP_001137695; /// NP_001163182; /// NP_001163183; /// NP_611253; /// NP_611254;, nucleotide= NM_001144221; /// NM_001144222; /// NM_001144223; /// NM_001169711; /// NM_001169712; /// NM_137409; /// NM_137410;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034266 /// FBgn0034267.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00Down
Head21 24 of 4 0.40Down
Eye2 10 of 4 0.05Down
Thoracicoabdominal ganglion4 20 of 4 0.10Down
Salivary gland7 40 of 4 0.14Down
Crop141 64 of 4 2.60Up
Midgut1 00 of 4 0.00Down
Tubule4 10 of 4 0.10Down
Hindgut210 74 of 4 3.90Up
Heart1 00 of 4 0.03Down
Fat body1 00 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis8 20 of 4 0.20Down
Male accessory glands222 54 of 4 4.10Up
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca6 00 of 4 0.11Down
Adult carcass219 144 of 4 4.10Up
Larval CNS11 33 of 4 0.21Down
Larval Salivary gland33 53 of 4 0.61Down
Larval midgut14 12 of 4 0.26Down
Larval tubule127 134 of 4 2.40Up
Larval hindgut181 164 of 4 3.36Up
Larval fat body6 30 of 4 0.10Down
Larval trachea18 24 of 4 0.34Down
Larval carcass613 514 of 411.37Up
S2 cells (growing)1 00 of 4 0.02Down
Whole fly53 54 of 4



/// (CG4975 /// CG4984):

Annotation Number : CG4975
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034266 /// FBgn0034267
Gbrowse : chr2R:13614476-13615987 (+) // 100.0 //
Probeset : 1634872_at
Accessions : protein= NP_001137693; /// NP_001137694; /// NP_001137695; /// NP_001163182; /// NP_001163183; /// NP_611253; /// NP_611254;, nucleotide= NM_001144221; /// NM_001144222; /// NM_001144223; /// NM_001169711; /// NM_001169712; /// NM_137409; /// NM_137410;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034266 /// FBgn0034267.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 04 of 4 0.60Down
Head22 03 of 4 0.40Down
Eye26 34 of 4 0.53Down
Thoracicoabdominal ganglion29 14 of 4 0.60Down
Salivary gland47 43 of 4 0.96None
Crop33 24 of 4 0.70Down
Midgut39 34 of 4 0.80None
Tubule21 23 of 4 0.40Down
Hindgut32 34 of 4 0.70Down
Heart23 24 of 4 0.47Down
Fat body35 52 of 4 0.71Down
Ovary82 34 of 4 1.70Up
Testis30 44 of 4 0.60Down
Male accessory glands83 34 of 4 1.70Up
Virgin spermatheca21 12 of 4 0.43Down
Mated spermatheca27 22 of 4 0.55Down
Adult carcass31 34 of 4 0.60Down
Larval CNS77 74 of 4 1.57Up
Larval Salivary gland60 84 of 4 1.23None
Larval midgut25 22 of 4 0.52Down
Larval tubule41 24 of 4 0.80None
Larval hindgut46 34 of 4 0.94None
Larval fat body28 03 of 4 0.60Down
Larval trachea106 44 of 4 2.16Up
Larval carcass39 24 of 4 0.81Down
S2 cells (growing)61 24 of 4 1.25Up
Whole fly49 24 of 4

Looking for FBgn0034267. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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