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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034269 through 18771 annotations produced 1 hits



(CG6406):

Annotation Number : CG6406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034269
Gbrowse : chr2R:13621913-13624769 (-) // 100.0 //
Probeset : 1627966_s_at
Accessions : protein= NP_611256; /// NP_725714;, nucleotide= NM_137412; /// NM_166247;
FlyMine data for FBgn0034269.
BDGP gene expression has embryonic in situ data for CG6406: 4 pix of staining in 1 body parts.
Homophila reports that CG6406 is a close match (6e-32) to human gene DRCTNNB1A;FAM126A (NP_115970), a gene associated with Hypomyelination and congenital cataract, 610532 (3).
VDRC has 1 RNAi stocks for FBgn0034269 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain249 ± 44 of 4 1.70Up
Head142 ± 44 of 4 1.00None
Eye157 ± 74 of 4 1.10None
Thoracicoabdominal ganglion163 ± 24 of 4 1.10Up
Salivary gland177 ± 54 of 4 1.25Up
Crop114 ± 34 of 4 0.80Down
Midgut50 ± 24 of 4 0.40Down
Tubule138 ± 34 of 4 1.00None
Hindgut94 ± 34 of 4 0.70Down
Heart64 ± 64 of 4 0.45Down
Fat body57 ± 54 of 4 0.40Down
Ovary336 ± 24 of 4 2.40Up
Testis49 ± 24 of 4 0.30Down
Male accessory glands661 ± 174 of 4 4.60Up
Virgin spermatheca115 ± 74 of 4 0.81Down
Mated spermatheca113 ± 74 of 4 0.80Down
Adult carcass66 ± 34 of 4 0.50Down
Larval CNS113 ± 44 of 4 0.79Down
Larval Salivary gland194 ± 24 of 4 1.36Up
Larval midgut91 ± 34 of 4 0.64Down
Larval tubule98 ± 44 of 4 0.70Down
Larval hindgut107 ± 34 of 4 0.75Down
Larval fat body65 ± 24 of 4 0.50Down
Larval trachea76 ± 34 of 4 0.54Down
Larval carcass87 ± 14 of 4 0.61Down
S2 cells (growing)131 ± 24 of 4 0.92None
Whole fly142 ± 54 of 4

Looking for FBgn0034269. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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