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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034271 through 18771 annotations produced 1 hits



(CG4996):

Annotation Number : CG4996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034271
Gbrowse : chr2R:13627397-13631480 (+) // 100.0 //
Probeset : 1630423_at
Accessions : protein= NP_611258;, nucleotide= NM_137414;
FlyMine data for FBgn0034271.
VDRC has 2 RNAi stocks for FBgn0034271 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 ± 34 of 4 1.50Up
Head46 ± 14 of 4 0.70Down
Eye52 ± 24 of 4 0.85None
Thoracicoabdominal ganglion85 ± 34 of 4 1.40Up
Salivary gland66 ± 84 of 4 1.08None
Crop42 ± 44 of 4 0.70Down
Midgut26 ± 44 of 4 0.40Down
Tubule30 ± 14 of 4 0.50Down
Hindgut43 ± 34 of 4 0.70Down
Heart54 ± 24 of 4 0.88None
Fat body35 ± 94 of 4 0.57Down
Ovary172 ± 14 of 4 2.80Up
Testis18 ± 24 of 4 0.30Down
Male accessory glands38 ± 44 of 4 0.60Down
Virgin spermatheca44 ± 14 of 4 0.72Down
Mated spermatheca44 ± 34 of 4 0.72Down
Adult carcass44 ± 34 of 4 0.70Down
Larval CNS106 ± 64 of 4 1.73Up
Larval Salivary gland49 ± 44 of 4 0.80None
Larval midgut27 ± 04 of 4 0.45Down
Larval tubule73 ± 134 of 4 1.20None
Larval hindgut50 ± 24 of 4 0.81None
Larval fat body25 ± 44 of 4 0.40Down
Larval trachea57 ± 24 of 4 0.94None
Larval carcass37 ± 24 of 4 0.61Down
S2 cells (growing)66 ± 14 of 4 1.07None
Whole fly61 ± 34 of 4

Looking for FBgn0034271. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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