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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034272 through 18771 annotations produced 1 hits

CG14487 (Ir54a):

Annotation Number : CG14487
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034272
Gbrowse : chr2R:13632166-13633366 (+) // 100.0 //
Probeset : 1639167_at
Accessions : protein= NP_611259;, nucleotide= NM_137415;
FlyMine data for FBgn0034272.
BioGrid reports that CG14487 interacts with CG15894 CG32030 CG4889 CG6461 CG8084 CG8822 CG3727 CG4046 CG7622 CG7826 .
VDRC has 4 RNAi stocks for FBgn0034272 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head4 10 of 4 0.60None
Eye1 00 of 4 0.19None
Thoracicoabdominal ganglion2 00 of 4 0.30None
Salivary gland17 40 of 4 2.39None
Crop3 00 of 4 0.50None
Midgut11 31 of 4 1.60None
Tubule8 00 of 4 1.20None
Hindgut8 21 of 4 1.20None
Heart2 10 of 4 0.36None
Fat body4 20 of 4 0.60None
Ovary4 00 of 4 0.60None
Testis3 00 of 4 0.40None
Male accessory glands5 10 of 4 0.70None
Virgin spermatheca4 00 of 4 0.60None
Mated spermatheca7 10 of 4 0.96None
Adult carcass7 20 of 4 1.00None
Larval CNS3 20 of 4 0.45None
Larval Salivary gland7 20 of 4 1.04None
Larval midgut7 10 of 4 1.01None
Larval tubule11 21 of 4 1.50None
Larval hindgut7 20 of 4 0.96None
Larval fat body12 10 of 4 1.60None
Larval trachea6 20 of 4 0.89None
Larval carcass2 00 of 4 0.33None
S2 cells (growing)7 10 of 4 0.98None
Whole fly7 20 of 4

Looking for FBgn0034272. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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