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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034279 through 18771 annotations produced 1 hits



(CG18635):

Annotation Number : CG18635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034279
Gbrowse : chr2R:13655312-13657411 (-) // 100.0 //
Probeset : 1641582_at
Accessions : protein= NP_611267;, nucleotide= NM_137423;
FlyMine data for FBgn0034279.
BioGrid reports that CG18635 interacts with CG7073 .
VDRC has 3 RNAi stocks for FBgn0034279 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head5 ± 10 of 4 0.30Down
Eye4 ± 10 of 4 0.27Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.30Down
Salivary gland11 ± 40 of 4 0.68None
Crop8 ± 10 of 4 0.50Down
Midgut242 ± 104 of 414.10Up
Tubule122 ± 34 of 4 7.10Up
Hindgut50 ± 24 of 4 2.90Up
Heart2 ± 10 of 4 0.13Down
Fat body1 ± 00 of 4 0.06Down
Ovary3 ± 10 of 4 0.20Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands5 ± 20 of 4 0.30Down
Virgin spermatheca3 ± 10 of 4 0.21Down
Mated spermatheca3 ± 10 of 4 0.22Down
Adult carcass7 ± 20 of 4 0.40Down
Larval CNS2 ± 10 of 4 0.14Down
Larval Salivary gland2 ± 00 of 4 0.15Down
Larval midgut187 ± 104 of 410.91Up
Larval tubule47 ± 14 of 4 2.80Up
Larval hindgut47 ± 54 of 4 2.76Up
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea3 ± 31 of 4 0.22Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.07Down
Whole fly17 ± 14 of 4

Looking for FBgn0034279. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime