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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034281 through 18771 annotations produced 1 hits


Annotation Number : CG14490
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034281
Gbrowse : chr2R:13748303-13749018 (+) // 100.0 //
Probeset : 1635648_at
Accessions : protein= NP_611274;, nucleotide= NM_137430;
FlyMine data for FBgn0034281.
Homophila reports that CG14490 is a close match (8e-15) to human gene ALS2;ALSJ;IAHSP;PLSJ (NP_065970), a gene associated with Amyotrophic lateral sclerosis, juvenile, 205100 (3);Primary lateral sclerosis, juvenile, 606353 (3);Spastic paralysis, infantile onset ascending, 607225 (3).
BioGrid reports that CG14490 interacts with CG31005 CG31211 CG4602 CG5808 CG15881 CG7664 CG8715 Dmel CG34383 .
VDRC has 3 RNAi stocks for FBgn0034281 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 1.60None
Head0 00 of 4 0.30None
Eye5 00 of 4 1.63None
Thoracicoabdominal ganglion2 10 of 4 0.80None
Salivary gland11 50 of 4 3.53None
Crop2 00 of 4 0.60None
Midgut3 00 of 4 1.00None
Tubule5 10 of 4 1.70None
Hindgut2 00 of 4 0.90None
Heart0 00 of 4 0.19None
Fat body3 20 of 4 1.12None
Ovary4 11 of 4 1.50None
Testis3 10 of 4 1.10None
Male accessory glands3 10 of 4 1.10None
Virgin spermatheca3 10 of 4 1.10None
Mated spermatheca1 00 of 4 0.60None
Adult carcass1 00 of 4 0.40None
Larval CNS3 20 of 4 0.98None
Larval Salivary gland2 10 of 4 0.68None
Larval midgut2 10 of 4 0.87None
Larval tubule4 10 of 4 1.40None
Larval hindgut3 00 of 4 0.98None
Larval fat body11 10 of 4 3.60Up
Larval trachea3 30 of 4 1.21None
Larval carcass1 00 of 4 0.43None
S2 cells (growing)4 00 of 4 1.43None
Whole fly3 10 of 4

Looking for FBgn0034281. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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