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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034286 through 18771 annotations produced 2 hits



dpr13 (dpr13):

Annotation Number : CG12557
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034286
Gbrowse : chr2R:13864920-13866458 (-) // 100.0 //
Probeset : 1638950_at
Accessions : protein= NP_001033956;, nucleotide= NM_001038867;
FlyMine data for FBgn0034286.
VDRC has 3 RNAi stocks for FBgn0034286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 74 of 416.70Up
Head14 ± 13 of 4 3.60Up
Eye3 ± 10 of 4 0.78None
Thoracicoabdominal ganglion48 ± 94 of 411.70Up
Salivary gland10 ± 21 of 4 2.59None
Crop16 ± 24 of 4 4.00Up
Midgut1 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 0.70Down
Hindgut3 ± 10 of 4 0.70None
Heart1 ± 00 of 4 0.39None
Fat body3 ± 10 of 4 0.73None
Ovary0 ± 00 of 4 0.10None
Testis0 ± 00 of 4 0.10None
Male accessory glands5 ± 20 of 4 1.30None
Virgin spermatheca0 ± 00 of 4 0.09None
Mated spermatheca3 ± 00 of 4 0.82None
Adult carcass2 ± 10 of 4 0.70None
Larval CNS20 ± 34 of 4 4.88Up
Larval Salivary gland1 ± 00 of 4 0.25None
Larval midgut0 ± 00 of 4 0.08None
Larval tubule4 ± 01 of 4 1.00None
Larval hindgut2 ± 00 of 4 0.51None
Larval fat body3 ± 10 of 4 0.70None
Larval trachea1 ± 10 of 4 0.46None
Larval carcass2 ± 00 of 4 0.61None
S2 cells (growing)1 ± 00 of 4 0.39None
Whole fly4 ± 10 of 4



dpr13 (dpr13):

Annotation Number : CG14493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034286
Gbrowse : chr2R:13876969-13877548 (-) // 100.0 //
Probeset : 1624352_at
Accessions : protein= NP_001033956;, nucleotide= NM_001038867;
FlyMine data for FBgn0034286.
VDRC has 3 RNAi stocks for FBgn0034286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 14 of 415.50Up
Head5 ± 10 of 4 2.40None
Eye0 ± 00 of 4 0.42None
Thoracicoabdominal ganglion22 ± 20 of 4 9.80Up
Salivary gland2 ± 00 of 4 0.97None
Crop2 ± 00 of 4 1.00None
Midgut3 ± 00 of 4 1.30None
Tubule2 ± 00 of 4 1.00None
Hindgut3 ± 00 of 4 1.40None
Heart3 ± 10 of 4 1.66None
Fat body3 ± 10 of 4 1.71None
Ovary1 ± 00 of 4 0.80None
Testis3 ± 20 of 4 1.70None
Male accessory glands4 ± 10 of 4 2.10None
Virgin spermatheca3 ± 10 of 4 1.67None
Mated spermatheca3 ± 20 of 4 1.46None
Adult carcass3 ± 00 of 4 1.60None
Larval CNS7 ± 20 of 4 3.49Up
Larval Salivary gland3 ± 10 of 4 1.50None
Larval midgut2 ± 00 of 4 1.30None
Larval tubule1 ± 00 of 4 0.70None
Larval hindgut2 ± 00 of 4 1.01None
Larval fat body2 ± 00 of 4 1.30None
Larval trachea3 ± 20 of 4 1.43None
Larval carcass3 ± 00 of 4 1.42None
S2 cells (growing)1 ± 00 of 4 0.88None
Whole fly2 ± 00 of 4

Looking for FBgn0034286. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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