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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034288 through 18771 annotations produced 1 hits


Annotation Number : CG5084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034288
Gbrowse : chr2R:13906146-13907267 (+) // 100.0 //
Probeset : 1626715_at
Accessions : protein= NP_611279;, nucleotide= NM_137435;
FlyMine data for FBgn0034288.
BDGP gene expression has embryonic in situ data for CG5084: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034288 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 1.20None
Head0 00 of 4 1.50None
Eye1 00 of 4 2.00Up
Thoracicoabdominal ganglion0 00 of 4 1.40None
Salivary gland4 00 of 4 6.63Up
Crop1 00 of 4 1.70None
Midgut2 00 of 4 3.70Up
Tubule0 00 of 4 1.20None
Hindgut0 00 of 4 1.30None
Heart1 00 of 4 1.92None
Fat body1 00 of 4 3.08None
Ovary0 00 of 4 1.00None
Testis0 00 of 4 1.10None
Male accessory glands0 00 of 4 1.50None
Virgin spermatheca1 00 of 4 3.08None
Mated spermatheca1 00 of 4 1.83None
Adult carcass2 00 of 4 3.30Up
Larval CNS1 00 of 4 1.96None
Larval Salivary gland1 00 of 4 2.46None
Larval midgut6453 2984 of 410755.00Up
Larval tubule1 00 of 4 1.70None
Larval hindgut0 00 of 4 1.04None
Larval fat body1 00 of 4 2.00None
Larval trachea0 00 of 4 0.83None
Larval carcass0 00 of 4 1.42None
S2 cells (growing)0 00 of 4 1.17None
Whole fly0 00 of 4

Looking for FBgn0034288. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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