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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034289 through 18771 annotations produced 1 hits



(CG10910):

Annotation Number : CG10910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034289
Gbrowse : chr2R:13907753-13909911 (+) // 100.0 //
Probeset : 1624945_a_at
Accessions : protein= NP_611280;, nucleotide= NM_137436;
FlyMine data for FBgn0034289.
BDGP gene expression has embryonic in situ data for CG10910: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034289 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head12 ± 32 of 4 0.00Down
Eye2 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland15 ± 21 of 4 0.04Down
Crop15 ± 43 of 4 0.00Down
Midgut4665 ± 1844 of 411.60Up
Tubule18 ± 42 of 4 0.00Down
Hindgut65 ± 64 of 4 0.20Down
Heart1 ± 00 of 4 0.00Down
Fat body6 ± 32 of 4 0.02Down
Ovary3 ± 00 of 4 0.00Down
Testis6 ± 12 of 4 0.00Down
Male accessory glands15 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 20 of 4 0.01Down
Mated spermatheca5 ± 10 of 4 0.01Down
Adult carcass15 ± 31 of 4 0.00Down
Larval CNS4 ± 21 of 4 0.01Down
Larval Salivary gland10 ± 31 of 4 0.03Down
Larval midgut7842 ± 3144 of 419.58Up
Larval tubule458 ± 1294 of 4 1.10None
Larval hindgut3266 ± 4544 of 4 8.15Up
Larval fat body20 ± 82 of 4 0.10Down
Larval trachea30 ± 363 of 4 0.08Down
Larval carcass7 ± 11 of 4 0.02Down
S2 cells (growing)6 ± 02 of 4 0.02Down
Whole fly400 ± 574 of 4

Looking for FBgn0034289. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime