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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034290 through 18771 annotations produced 1 hits



(CG5773):

Annotation Number : CG5773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034290
Gbrowse : chr2R:13930408-13931249 (-) // 100.0 //
Probeset : 1640400_at
Accessions : protein= NP_611281;, nucleotide= NM_137437;
FlyMine data for FBgn0034290.
BDGP gene expression has embryonic in situ data for CG5773: 17 pix of staining in 3 body parts.
BioGrid reports that CG5773 interacts with CG6357 .
VDRC has 1 RNAi stocks for FBgn0034290 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 34 of 4 0.10Down
Head2542 1874 of 4 5.40Up
Eye530 804 of 4 1.12None
Thoracicoabdominal ganglion56 74 of 4 0.10Down
Salivary gland31 70 of 4 0.07Down
Crop62 24 of 4 0.10Down
Midgut325 134 of 4 0.70Down
Tubule26 51 of 4 0.10Down
Hindgut112 44 of 4 0.20Down
Heart605 264 of 4 1.28None
Fat body1293 784 of 4 2.74Up
Ovary8 20 of 4 0.00Down
Testis13 31 of 4 0.00Down
Male accessory glands14 30 of 4 0.00Down
Virgin spermatheca388 504 of 4 0.82None
Mated spermatheca879 734 of 4 1.86Up
Adult carcass1065 434 of 4 2.30Up
Larval CNS19 41 of 4 0.04Down
Larval Salivary gland189 114 of 4 0.40Down
Larval midgut612 924 of 4 1.30None
Larval tubule43 53 of 4 0.10Down
Larval hindgut968 1034 of 4 2.05Up
Larval fat body6562 6274 of 413.90Up
Larval trachea500 894 of 4 1.06None
Larval carcass1227 1844 of 4 2.60Up
S2 cells (growing)18 00 of 4 0.04Down
Whole fly472 474 of 4

Looking for FBgn0034290. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime