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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034294 through 18771 annotations produced 1 hits



Mucin 55B (Muc55B):

Annotation Number : CG5765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034294
Gbrowse : chr2R:13937730-13939610 (-) // 100.0 //
Probeset : 1640806_at
Accessions : protein= NP_611285;, nucleotide= NM_137441;
FlyMine data for FBgn0034294.
BDGP gene expression has embryonic in situ data for CG5765: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.40None
Eye6 ± 00 of 4 0.80None
Thoracicoabdominal ganglion5 ± 20 of 4 0.60None
Salivary gland11 ± 40 of 4 1.52None
Crop0 ± 00 of 4 0.10None
Midgut100 ± 34 of 412.80Up
Tubule2 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.50None
Heart2 ± 00 of 4 0.30None
Fat body2 ± 20 of 4 0.29None
Ovary1 ± 00 of 4 0.20None
Testis3 ± 10 of 4 0.40None
Male accessory glands4 ± 20 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.14None
Mated spermatheca3 ± 10 of 4 0.40None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS3 ± 20 of 4 0.41None
Larval Salivary gland1 ± 00 of 4 0.13None
Larval midgut6014 ± 784 of 4768.56Up
Larval tubule1 ± 00 of 4 0.10None
Larval hindgut7 ± 20 of 4 0.97None
Larval fat body2 ± 00 of 4 0.30None
Larval trachea4 ± 20 of 4 0.58None
Larval carcass2 ± 10 of 4 0.31None
S2 cells (growing)0 ± 00 of 4 0.11None
Whole fly7 ± 21 of 4

Looking for FBgn0034294. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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