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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034295 through 18771 annotations produced 1 hits


Annotation Number : CG10911
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034295
Gbrowse : chr2R:13940051-13941569 (-) // 100.0 //
Probeset : 1624342_at
Accessions : protein= NP_611286;, nucleotide= NM_137442;
FlyMine data for FBgn0034295.
BDGP gene expression has embryonic in situ data for CG10911: 8 pix of staining in 1 body parts.
BioGrid reports that CG10911 interacts with CG13210 CG15835 .
VDRC has 1 RNAi stocks for FBgn0034295 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head9 81 of 4 0.00Down
Eye5 31 of 4 0.00Down
Thoracicoabdominal ganglion4 20 of 4 0.00Down
Salivary gland24 31 of 4 0.01Down
Crop11 42 of 4 0.00Down
Midgut5169 1364 of 4 2.60Up
Tubule330 943 of 4 0.20Down
Hindgut3638 834 of 4 1.90Up
Heart2 21 of 4 0.00Down
Fat body2 30 of 4 0.00Down
Ovary1 00 of 4 0.00Down
Testis4 21 of 4 0.00Down
Male accessory glands4 10 of 4 0.00Down
Virgin spermatheca4 20 of 4 0.00Down
Mated spermatheca8 10 of 4 0.00Down
Adult carcass10 11 of 4 0.00Down
Larval CNS1 10 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.00Down
Larval midgut2378 5754 of 4 1.21None
Larval tubule825 2274 of 4 0.40Down
Larval hindgut3693 334 of 4 1.88Up
Larval fat body2 00 of 4 0.00Down
Larval trachea1 20 of 4 0.00Down
Larval carcass4 00 of 4 0.00Down
S2 cells (growing)2 00 of 4 0.00Down
Whole fly1963 2004 of 4

Looking for FBgn0034295. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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