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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034296 through 18771 annotations produced 1 hits



(CG10912):

Annotation Number : CG10912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034296
Gbrowse : chr2R:13943567-13944564 (-) // 100.0 //
Probeset : 1639454_at
Accessions : protein= NP_611287;, nucleotide= NM_137443;
FlyMine data for FBgn0034296.
BDGP gene expression has embryonic in situ data for CG10912: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0034296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head12 ± 61 of 4 0.00Down
Eye9 ± 51 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland7 ± 40 of 4 0.01Down
Crop9 ± 20 of 4 0.00Down
Midgut5695 ± 834 of 4 4.40Up
Tubule9 ± 10 of 4 0.00Down
Hindgut439 ± 534 of 4 0.30Down
Heart1 ± 00 of 4 0.00Down
Fat body4 ± 40 of 4 0.00Down
Ovary2 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca2 ± 00 of 4 0.00Down
Adult carcass7 ± 20 of 4 0.00Down
Larval CNS10 ± 181 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.00Down
Larval midgut5838 ± 2264 of 4 4.56Up
Larval tubule755 ± 1174 of 4 0.60None
Larval hindgut984 ± 494 of 4 0.77None
Larval fat body54 ± 401 of 4 0.00Down
Larval trachea5 ± 41 of 4 0.00Down
Larval carcass8 ± 20 of 4 0.01Down
S2 cells (growing)3 ± 00 of 4 0.00Down
Whole fly1281 ± 2384 of 4

Looking for FBgn0034296. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime