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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034301 through 18771 annotations produced 1 hits



(CG5756):

Annotation Number : CG5756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034301
Gbrowse : chr2R:13988554-13995891 (-) // 100.0 //
Probeset : 1638287_a_at
Accessions : protein= NP_611292; /// NP_725747;, nucleotide= NM_137448; /// NM_166262;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0034301.
BDGP gene expression has embryonic in situ data for CG5756: 9 pix of staining in 4 body parts.
VDRC has 3 RNAi stocks for FBgn0034301 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.70None
Head0 ± 00 of 4 0.80None
Eye4 ± 21 of 4 7.04None
Thoracicoabdominal ganglion0 ± 00 of 4 0.80None
Salivary gland2 ± 00 of 4 2.96Up
Crop0 ± 00 of 4 1.30None
Midgut0 ± 00 of 4 1.00None
Tubule0 ± 00 of 4 0.80None
Hindgut0 ± 00 of 4 0.90None
Heart0 ± 00 of 4 0.89None
Fat body1 ± 00 of 4 1.50None
Ovary0 ± 00 of 4 1.00None
Testis0 ± 00 of 4 0.90None
Male accessory glands1 ± 00 of 4 1.60None
Virgin spermatheca0 ± 00 of 4 1.07None
Mated spermatheca1 ± 00 of 4 1.39None
Adult carcass1 ± 00 of 4 2.00None
Larval CNS0 ± 00 of 4 0.64None
Larval Salivary gland2 ± 00 of 4 2.89None
Larval midgut0 ± 00 of 4 1.21None
Larval tubule0 ± 00 of 4 0.90None
Larval hindgut0 ± 00 of 4 0.79None
Larval fat body1 ± 00 of 4 2.40None
Larval trachea1 ± 10 of 4 2.68None
Larval carcass128 ± 454 of 4184.07None
S2 cells (growing)0 ± 00 of 4 0.89None
Whole fly0 ± 00 of 4

Looking for FBgn0034301. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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