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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034304 through 18771 annotations produced 1 hits



(CG5742):

Annotation Number : CG5742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034304
Gbrowse : chr2R:14035950-14038892 (-) // 100.0 //
Probeset : 1630942_at
Accessions : protein= NP_611295;, nucleotide= NM_137451;
FlyMine data for FBgn0034304.
BDGP gene expression has embryonic in situ data for CG5742: 4 pix of staining in 1 body parts.
BioGrid reports that CG5742 interacts with CG7236 CG7417 .
VDRC has 2 RNAi stocks for FBgn0034304 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain135 ± 44 of 4 3.10Up
Head55 ± 24 of 4 1.30Up
Eye108 ± 74 of 4 2.49Up
Thoracicoabdominal ganglion99 ± 44 of 4 2.30Up
Salivary gland93 ± 54 of 4 2.16Up
Crop46 ± 24 of 4 1.10None
Midgut70 ± 44 of 4 1.60Up
Tubule42 ± 04 of 4 1.00None
Hindgut41 ± 24 of 4 1.00None
Heart58 ± 24 of 4 1.36Up
Fat body28 ± 44 of 4 0.66Down
Ovary92 ± 34 of 4 2.10Up
Testis23 ± 24 of 4 0.60Down
Male accessory glands137 ± 84 of 4 3.20Up
Virgin spermatheca52 ± 34 of 4 1.20None
Mated spermatheca64 ± 44 of 4 1.48Up
Adult carcass25 ± 34 of 4 0.60Down
Larval CNS145 ± 84 of 4 3.36Up
Larval Salivary gland114 ± 24 of 4 2.64Up
Larval midgut88 ± 114 of 4 2.03Up
Larval tubule75 ± 34 of 4 1.70Up
Larval hindgut60 ± 24 of 4 1.40Up
Larval fat body37 ± 24 of 4 0.90Down
Larval trachea64 ± 84 of 4 1.49Up
Larval carcass51 ± 24 of 4 1.18Up
S2 cells (growing)139 ± 14 of 4 3.22Up
Whole fly43 ± 14 of 4

Looking for FBgn0034304. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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