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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034307 through 18771 annotations produced 1 hits



(CG10914):

Annotation Number : CG10914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034307
Gbrowse : chr2R:14045771-14047815 (+) // 100.0 //
Probeset : 1627851_at
Accessions : protein= NP_611297;, nucleotide= NM_137453;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005525 // GTP binding // inferred from electronic
FlyMine data for FBgn0034307.
BioGrid reports that CG10914 interacts with CG15676 CG5164 CG7009 CG15631 CG3528 .
VDRC has 3 RNAi stocks for FBgn0034307 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain36 14 of 4 0.90None
Head26 34 of 4 0.70Down
Eye24 24 of 4 0.61Down
Thoracicoabdominal ganglion43 24 of 4 1.10None
Salivary gland40 40 of 4 1.01None
Crop24 14 of 4 0.60Down
Midgut31 22 of 4 0.80None
Tubule46 24 of 4 1.20Up
Hindgut30 24 of 4 0.80Down
Heart34 14 of 4 0.86None
Fat body61 54 of 4 1.55Up
Ovary92 24 of 4 2.30Up
Testis31 44 of 4 0.80None
Male accessory glands32 64 of 4 0.80None
Virgin spermatheca54 54 of 4 1.37None
Mated spermatheca52 24 of 4 1.30Up
Adult carcass30 14 of 4 0.80Down
Larval CNS71 124 of 4 1.80Up
Larval Salivary gland26 14 of 4 0.67Down
Larval midgut31 24 of 4 0.80Down
Larval tubule23 14 of 4 0.60Down
Larval hindgut52 14 of 4 1.31Up
Larval fat body21 12 of 4 0.50Down
Larval trachea32 64 of 4 0.81None
Larval carcass44 54 of 4 1.11None
S2 cells (growing)66 24 of 4 1.66Up
Whole fly39 14 of 4

Looking for FBgn0034307. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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