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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034308 through 18771 annotations produced 1 hits


Annotation Number : CG10915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034308
Gbrowse : chr2R:14048221-14051719 (+) // 100.0 //
Probeset : 1624365_at
Accessions : protein= NP_611299;, nucleotide= NM_137455;
FlyMine data for FBgn0034308.
BDGP gene expression has embryonic in situ data for CG10915: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0034308 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034308 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain237 54 of 4 2.40Up
Head79 74 of 4 0.80None
Eye77 34 of 4 0.77Down
Thoracicoabdominal ganglion210 124 of 4 2.10Up
Salivary gland73 74 of 4 0.73Down
Crop61 44 of 4 0.60Down
Midgut45 24 of 4 0.50Down
Tubule56 14 of 4 0.60Down
Hindgut52 04 of 4 0.50Down
Heart39 24 of 4 0.39Down
Fat body58 104 of 4 0.58Down
Ovary288 54 of 4 2.90Up
Testis19 14 of 4 0.20Down
Male accessory glands81 44 of 4 0.80Down
Virgin spermatheca33 34 of 4 0.33Down
Mated spermatheca28 24 of 4 0.29Down
Adult carcass60 34 of 4 0.60Down
Larval CNS190 184 of 4 1.90Up
Larval Salivary gland64 34 of 4 0.65Down
Larval midgut66 74 of 4 0.66Down
Larval tubule115 34 of 4 1.20Up
Larval hindgut90 44 of 4 0.90None
Larval fat body49 14 of 4 0.50Down
Larval trachea54 64 of 4 0.54Down
Larval carcass63 84 of 4 0.63Down
S2 cells (growing)110 54 of 4 1.10None
Whole fly100 14 of 4

Looking for FBgn0034308. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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