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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034310 through 18771 annotations produced 1 hits

Nucleoporin 75 (Nup75):

Annotation Number : CG5733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034310
Gbrowse : chr2R:14052192-14054634 (-) // 100.0 //
Probeset : 1636645_at
Accessions : protein= NP_611300;, nucleotide= NM_137456;
FlyMine data for FBgn0034310.
BioGrid reports that CG5733 interacts with CG5848 CG6426 CG7392 CG7787 .
TRiP has 1 RNAi stocks for FBgn0034310 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034310 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 14 of 4 0.20Down
Head50 44 of 4 0.30Down
Eye30 24 of 4 0.17Down
Thoracicoabdominal ganglion46 34 of 4 0.30Down
Salivary gland87 94 of 4 0.49Down
Crop81 34 of 4 0.50Down
Midgut76 54 of 4 0.40Down
Tubule111 104 of 4 0.60Down
Hindgut62 24 of 4 0.30Down
Heart75 34 of 4 0.43Down
Fat body131 314 of 4 0.74None
Ovary382 154 of 4 2.20Up
Testis157 74 of 4 0.90None
Male accessory glands113 34 of 4 0.60Down
Virgin spermatheca110 94 of 4 0.62Down
Mated spermatheca116 114 of 4 0.65Down
Adult carcass57 14 of 4 0.30Down
Larval CNS474 324 of 4 2.67Up
Larval Salivary gland327 54 of 4 1.84Up
Larval midgut81 44 of 4 0.46Down
Larval tubule99 44 of 4 0.60Down
Larval hindgut139 44 of 4 0.78Down
Larval fat body113 64 of 4 0.60Down
Larval trachea160 64 of 4 0.91None
Larval carcass161 184 of 4 0.91None
S2 cells (growing)248 24 of 4 1.40Up
Whole fly177 104 of 4

Looking for FBgn0034310. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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