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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034317 through 18771 annotations produced 1 hits



():

Annotation Number : CG14499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034317
Gbrowse : chr2R:14075437-14075794 (+) // 100.0 //
Probeset : 1635270_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0034317.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00None
Head3 ± 10 of 4 0.00None
Eye2 ± 10 of 4 0.02None
Thoracicoabdominal ganglion4 ± 10 of 4 0.00None
Salivary gland6 ± 40 of 4 0.05None
Crop5 ± 20 of 4 0.00None
Midgut2366 ± 2974 of 418.20Up
Tubule6 ± 00 of 4 0.10Down
Hindgut190 ± 674 of 4 1.50None
Heart1 ± 10 of 4 0.01None
Fat body5 ± 50 of 4 0.04None
Ovary2 ± 00 of 4 0.00None
Testis2 ± 10 of 4 0.00None
Male accessory glands8 ± 10 of 4 0.10None
Virgin spermatheca2 ± 00 of 4 0.02None
Mated spermatheca2 ± 00 of 4 0.02None
Adult carcass3 ± 00 of 4 0.00None
Larval CNS4 ± 20 of 4 0.04None
Larval Salivary gland11 ± 20 of 4 0.09None
Larval midgut163 ± 144 of 4 1.26None
Larval tubule1 ± 00 of 4 0.00None
Larval hindgut1 ± 00 of 4 0.01None
Larval fat body9 ± 10 of 4 0.10None
Larval trachea1 ± 10 of 4 0.02None
Larval carcass1 ± 00 of 4 0.01None
S2 cells (growing)4 ± 10 of 4 0.03None
Whole fly129 ± 834 of 4

Looking for FBgn0034317. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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