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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034323 through 18771 annotations produced 1 hits



(CG18537):

Annotation Number : CG18537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034323
Gbrowse : chr2R:14183449-14184138 (+) // 100.0 //
Probeset : 1623014_at
Accessions : protein= NP_611313;, nucleotide= NM_137469;
Interpro : 0031177 // phosphopantetheine binding // inferred from electronic annotation
FlyMine data for FBgn0034323.
VDRC has 3 RNAi stocks for FBgn0034323 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head4 10 of 4 0.30Down
Eye1 00 of 4 0.11Down
Thoracicoabdominal ganglion4 00 of 4 0.30Down
Salivary gland11 20 of 4 0.72None
Crop8 12 of 4 0.50None
Midgut5 10 of 4 0.30Down
Tubule5 00 of 4 0.30Down
Hindgut3 01 of 4 0.20Down
Heart1 00 of 4 0.09Down
Fat body9 22 of 4 0.59None
Ovary3 10 of 4 0.20Down
Testis3 11 of 4 0.20Down
Male accessory glands11 11 of 4 0.70None
Virgin spermatheca9 22 of 4 0.55None
Mated spermatheca7 32 of 4 0.47None
Adult carcass133 84 of 4 8.10Up
Larval CNS7 02 of 4 0.46None
Larval Salivary gland8 22 of 4 0.52None
Larval midgut3 10 of 4 0.20Down
Larval tubule4 10 of 4 0.20Down
Larval hindgut3 10 of 4 0.20Down
Larval fat body7 20 of 4 0.50None
Larval trachea3 10 of 4 0.21Down
Larval carcass6 11 of 4 0.38Down
S2 cells (growing)3 00 of 4 0.21Down
Whole fly16 34 of 4

Looking for FBgn0034323. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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