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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034326 through 18771 annotations produced 1 hits


(CG18540):

Annotation Number : CG18540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034326
Gbrowse : chr2R:14186962-14187539 (+) // 100.0 //
Probeset : 1622924_at
Accessions : protein= NP_611316;, nucleotide= NM_137472;
FlyMine data for FBgn0034326.
BioGrid reports that CG18540 interacts with CG31326 CG9495 CG8597 .
VDRC has 3 RNAi stocks for FBgn0034326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head3 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion7 ± 11 of 4 0.10Down
Salivary gland7 ± 40 of 4 0.15Down
Crop6 ± 00 of 4 0.10Down
Midgut8 ± 10 of 4 0.20Down
Tubule6 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.07Down
Fat body9 ± 40 of 4 0.20Down
Ovary3 ± 00 of 4 0.10Down
Testis5 ± 11 of 4 0.10Down
Male accessory glands4 ± 21 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.10Down
Mated spermatheca3 ± 00 of 4 0.07Down
Adult carcass330 ± 124 of 4 7.00Up
Larval CNS2 ± 10 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.08Down
Larval midgut3 ± 10 of 4 0.08Down
Larval tubule7 ± 20 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.10Down
Larval fat body2 ± 10 of 4 0.10Down
Larval trachea3 ± 20 of 4 0.08Down
Larval carcass3 ± 10 of 4 0.07Down
S2 cells (growing)5 ± 00 of 4 0.11Down
Whole fly47 ± 44 of 4

Looking for FBgn0034326. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime