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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034329 through 18771 annotations produced 1 hits



Immune induced molecule 1 (IM1):

Annotation Number : CG18108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034329
Gbrowse : chr2R:14271456-14271893 (+) // 100.0 //
Probeset : 1633053_at
Accessions : protein= NP_611319;, nucleotide= NM_137475;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0034329.
BDGP gene expression has embryonic in situ data for IM1: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0034329 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 14 of 4 0.00Down
Head1608 ± 534 of 4 6.40Up
Eye201 ± 624 of 4 0.81None
Thoracicoabdominal ganglion13 ± 24 of 4 0.10Down
Salivary gland3 ± 10 of 4 0.01Down
Crop182 ± 234 of 4 0.70None
Midgut4 ± 11 of 4 0.00Down
Tubule30 ± 142 of 4 0.10Down
Hindgut29 ± 14 of 4 0.10Down
Heart137 ± 124 of 4 0.55Down
Fat body1160 ± 5394 of 4 4.65Up
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.00Down
Male accessory glands5 ± 21 of 4 0.00Down
Virgin spermatheca459 ± 744 of 4 1.84None
Mated spermatheca189 ± 534 of 4 0.76None
Adult carcass1117 ± 2654 of 4 4.50Up
Larval CNS1 ± 10 of 4 0.01Down
Larval Salivary gland5 ± 20 of 4 0.02Down
Larval midgut11 ± 22 of 4 0.04Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut7 ± 22 of 4 0.03Down
Larval fat body414 ± 4012 of 4 1.70None
Larval trachea3 ± 30 of 4 0.02Down
Larval carcass10 ± 41 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly249 ± 244 of 4

Looking for FBgn0034329. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime