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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034330 through 18771 annotations produced 1 hits



(CG18107):

Annotation Number : CG18107
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034330
Gbrowse : chr2R:14272069-14272423 (+) // 100.0 //
Probeset : 1638772_at
Accessions : protein= NP_663309;, nucleotide= NM_145336;
FlyMine data for FBgn0034330.
BioGrid reports that CG18107 interacts with CG9876 .
VDRC has 2 RNAi stocks for FBgn0034330 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 14 of 4 0.10Down
Head1007 ± 1084 of 4 3.70Up
Eye176 ± 254 of 4 0.65None
Thoracicoabdominal ganglion21 ± 44 of 4 0.10Down
Salivary gland12 ± 60 of 4 0.04Down
Crop45 ± 44 of 4 0.20Down
Midgut8 ± 10 of 4 0.00Down
Tubule14 ± 12 of 4 0.10Down
Hindgut88 ± 74 of 4 0.30Down
Heart828 ± 764 of 4 3.07Up
Fat body1902 ± 974 of 4 7.05Up
Ovary2 ± 00 of 4 0.00Down
Testis5 ± 01 of 4 0.00Down
Male accessory glands8 ± 11 of 4 0.00Down
Virgin spermatheca673 ± 384 of 4 2.50Up
Mated spermatheca666 ± 854 of 4 2.47Up
Adult carcass1114 ± 474 of 4 4.10Up
Larval CNS2 ± 10 of 4 0.01Down
Larval Salivary gland9 ± 10 of 4 0.03Down
Larval midgut13 ± 03 of 4 0.05Down
Larval tubule4 ± 11 of 4 0.00Down
Larval hindgut8 ± 22 of 4 0.03Down
Larval fat body19 ± 63 of 4 0.10Down
Larval trachea11 ± 73 of 4 0.04Down
Larval carcass14 ± 14 of 4 0.05Down
S2 cells (growing)4 ± 10 of 4 0.02Down
Whole fly269 ± 544 of 4

Looking for FBgn0034330. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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