FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034345 through 18771 annotations produced 4 hits

(CG5174):

Annotation Number : CG5174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034345
Gbrowse : chr2R:14310438-14313433 (+) // 100.0 //
Probeset : 1640233_at
Accessions : protein= NP_001163194; /// NP_611331; /// NP_725788; /// NP_725789; /// NP_725790; /// NP_725791; /// NP_725792; /// NP_725793;, nucleotide= NM_001169723; /// NM_137487; /// NM_166283; /// NM_166284; /// NM_166285; /// NM_166286; /// NM_166287; /// NM_166288;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // infer
FlyMine data for FBgn0034345.
BioGrid reports that CG5174 interacts with CG6339 CG6156 CG7231 CG8887 .
TRiP has 2 RNAi stocks for FBgn0034345 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034345 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	599 ± 12	4 of 4	1.40	Up
Head	518 ± 17	4 of 4	1.20	None
Eye	497 ± 30	4 of 4	1.16	None
Thoracicoabdominal ganglion	673 ± 29	4 of 4	1.60	Up
Salivary gland	554 ± 19	4 of 4	1.29	Up
Crop	635 ± 20	4 of 4	1.50	Up
Midgut	620 ± 20	4 of 4	1.40	Up
Tubule	609 ± 39	4 of 4	1.40	Up
Hindgut	559 ± 10	4 of 4	1.30	Up
Heart	746 ± 17	4 of 4	1.73	Up
Fat body	526 ± 22	4 of 4	1.22	Up
Ovary	629 ± 11	4 of 4	1.50	Up
Testis	154 ± 9	4 of 4	0.40	Down
Male accessory glands	1216 ± 20	4 of 4	2.80	Up
Virgin spermatheca	461 ± 32	4 of 4	1.07	None
Mated spermatheca	570 ± 33	4 of 4	1.32	Up
Adult carcass	326 ± 14	4 of 4	0.80	Down
Larval CNS	733 ± 35	4 of 4	1.70	Up
Larval Salivary gland	883 ± 62	4 of 4	2.05	Up
Larval midgut	642 ± 26	4 of 4	1.49	Up
Larval tubule	697 ± 23	4 of 4	1.60	Up
Larval hindgut	623 ± 9	4 of 4	1.45	Up
Larval fat body	603 ± 55	4 of 4	1.40	Up
Larval trachea	595 ± 38	4 of 4	1.38	Up
Larval carcass	571 ± 53	4 of 4	1.33	None
S2 cells (growing)	1017 ± 29	4 of 4	2.36	Up
Whole fly	430 ± 29	4 of 4

(CG5174):

Annotation Number : CG5174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034345
Gbrowse : chr2R:14310438-14313433 (+) // 100.0 //
Probeset : 1634112_a_at
Accessions : protein= NP_001163194; /// NP_611331; /// NP_725788; /// NP_725789; /// NP_725790; /// NP_725791; /// NP_725792; /// NP_725793;, nucleotide= NM_001169723; /// NM_137487; /// NM_166283; /// NM_166284; /// NM_166285; /// NM_166286; /// NM_166287; /// NM_166288;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // infer
FlyMine data for FBgn0034345.
BioGrid reports that CG5174 interacts with CG6339 CG6156 CG7231 CG8887 .
TRiP has 2 RNAi stocks for FBgn0034345 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034345 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	584 ± 14	4 of 4	1.10	None
Head	483 ± 30	4 of 4	0.90	None
Eye	593 ± 26	4 of 4	1.09	None
Thoracicoabdominal ganglion	553 ± 15	4 of 4	1.00	None
Salivary gland	1081 ± 11	4 of 4	1.98	Up
Crop	620 ± 18	4 of 4	1.10	None
Midgut	698 ± 7	4 of 4	1.30	Up
Tubule	268 ± 20	4 of 4	0.50	Down
Hindgut	568 ± 5	4 of 4	1.00	None
Heart	818 ± 13	4 of 4	1.50	Up
Fat body	360 ± 14	4 of 4	0.66	Down
Ovary	793 ± 14	4 of 4	1.50	Up
Testis	406 ± 6	4 of 4	0.70	Down
Male accessory glands	1655 ± 64	4 of 4	3.00	Up
Virgin spermatheca	393 ± 21	4 of 4	0.72	Down
Mated spermatheca	485 ± 33	4 of 4	0.89	None
Adult carcass	325 ± 3	4 of 4	0.60	Down
Larval CNS	704 ± 40	4 of 4	1.29	Up
Larval Salivary gland	1267 ± 42	4 of 4	2.32	Up
Larval midgut	753 ± 39	4 of 4	1.38	Up
Larval tubule	695 ± 27	4 of 4	1.30	Up
Larval hindgut	704 ± 34	4 of 4	1.29	Up
Larval fat body	792 ± 45	4 of 4	1.50	Up
Larval trachea	911 ± 76	4 of 4	1.67	Up
Larval carcass	549 ± 36	4 of 4	1.01	None
S2 cells (growing)	1433 ± 28	4 of 4	2.63	Up
Whole fly	545 ± 23	4 of 4

(CG5174):

Annotation Number : CG5174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034345
Gbrowse : chr2R:14308914-14312388 (+) // 100.0 //
Probeset : 1624146_at
Accessions : protein= NP_001163194; /// NP_611331; /// NP_725788; /// NP_725789; /// NP_725790; /// NP_725791; /// NP_725792; /// NP_725793;, nucleotide= NM_001169723; /// NM_137487; /// NM_166283; /// NM_166284; /// NM_166285; /// NM_166286; /// NM_166287; /// NM_166288;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // infer
FlyMine data for FBgn0034345.
BioGrid reports that CG5174 interacts with CG6339 CG6156 CG7231 CG8887 .
TRiP has 2 RNAi stocks for FBgn0034345 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034345 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	24 ± 1	4 of 4	3.10	Up
Head	6 ± 0	0 of 4	0.80	None
Eye	4 ± 1	1 of 4	0.62	None
Thoracicoabdominal ganglion	18 ± 5	4 of 4	2.30	None
Salivary gland	15 ± 1	0 of 4	1.95	Up
Crop	10 ± 2	1 of 4	1.30	None
Midgut	18 ± 2	2 of 4	2.30	Up
Tubule	5 ± 0	0 of 4	0.70	Down
Hindgut	10 ± 1	0 of 4	1.30	None
Heart	7 ± 1	4 of 4	0.99	None
Fat body	7 ± 1	0 of 4	0.90	None
Ovary	5 ± 0	0 of 4	0.70	None
Testis	4 ± 1	0 of 4	0.60	None
Male accessory glands	26 ± 2	2 of 4	3.30	Up
Virgin spermatheca	5 ± 0	1 of 4	0.70	None
Mated spermatheca	6 ± 1	0 of 4	0.83	None
Adult carcass	13 ± 3	0 of 4	1.70	None
Larval CNS	15 ± 4	4 of 4	2.00	Up
Larval Salivary gland	10 ± 1	0 of 4	1.26	None
Larval midgut	8 ± 1	0 of 4	1.00	None
Larval tubule	7 ± 2	0 of 4	0.90	None
Larval hindgut	6 ± 0	1 of 4	0.81	None
Larval fat body	15 ± 3	1 of 4	1.90	None
Larval trachea	5 ± 4	1 of 4	0.71	None
Larval carcass	11 ± 1	0 of 4	1.42	None
S2 cells (growing)	32 ± 0	4 of 4	4.04	Up
Whole fly	8 ± 1	0 of 4

(CG5174):

Annotation Number : CG5174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034345
Gbrowse : chr2R:14308914-14313515 (+) // 100.0 //
Probeset : 1623053_a_at
Accessions : protein= NP_001163194; /// NP_611331; /// NP_725788; /// NP_725789; /// NP_725790; /// NP_725791; /// NP_725792; /// NP_725793;, nucleotide= NM_001169723; /// NM_137487; /// NM_166283; /// NM_166284; /// NM_166285; /// NM_166286; /// NM_166287; /// NM_166288;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0030170 // pyridoxal phosphate binding // infer
FlyMine data for FBgn0034345.
BioGrid reports that CG5174 interacts with CG6339 CG6156 CG7231 CG8887 .
TRiP has 2 RNAi stocks for FBgn0034345 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034345 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	349 ± 12	4 of 4	1.10	Up
Head	303 ± 24	4 of 4	1.00	None
Eye	435 ± 20	4 of 4	1.40	Up
Thoracicoabdominal ganglion	328 ± 25	4 of 4	1.10	None
Salivary gland	459 ± 16	4 of 4	1.48	Up
Crop	408 ± 12	4 of 4	1.30	Up
Midgut	445 ± 8	4 of 4	1.40	Up
Tubule	73 ± 6	4 of 4	0.20	Down
Hindgut	386 ± 20	4 of 4	1.20	Up
Heart	562 ± 19	4 of 4	1.81	Up
Fat body	192 ± 36	4 of 4	0.62	Down
Ovary	395 ± 2	4 of 4	1.30	Up
Testis	220 ± 7	4 of 4	0.70	Down
Male accessory glands	774 ± 42	4 of 4	2.50	Up
Virgin spermatheca	59 ± 2	4 of 4	0.19	Down
Mated spermatheca	64 ± 3	4 of 4	0.21	Down
Adult carcass	240 ± 11	4 of 4	0.80	Down
Larval CNS	342 ± 25	4 of 4	1.10	None
Larval Salivary gland	515 ± 33	4 of 4	1.66	Up
Larval midgut	288 ± 8	4 of 4	0.93	None
Larval tubule	426 ± 19	4 of 4	1.40	Up
Larval hindgut	297 ± 5	4 of 4	0.96	None
Larval fat body	467 ± 37	4 of 4	1.50	Up
Larval trachea	533 ± 49	4 of 4	1.72	Up
Larval carcass	238 ± 19	4 of 4	0.77	Down
S2 cells (growing)	831 ± 10	4 of 4	2.67	Up
Whole fly	311 ± 12	4 of 4

Looking for FBgn0034345. 4 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720