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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034346 through 18771 annotations produced 1 hits



(CG12263):

Annotation Number : CG12263
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034346
Gbrowse : chr2R:14313934-14317838 (+) // 100.0 //
Probeset : 1632403_at
Accessions : protein= NP_611332;, nucleotide= NM_137488;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0034346.
VDRC has 1 RNAi stocks for FBgn0034346 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain132 54 of 4 2.40Up
Head51 54 of 4 0.90None
Eye33 14 of 4 0.62Down
Thoracicoabdominal ganglion99 64 of 4 1.80Up
Salivary gland98 44 of 4 1.80Up
Crop48 24 of 4 0.90None
Midgut67 14 of 4 1.20Up
Tubule312 304 of 4 5.70Up
Hindgut55 24 of 4 1.00None
Heart32 14 of 4 0.59Down
Fat body39 84 of 4 0.72Down
Ovary97 24 of 4 1.80Up
Testis51 34 of 4 0.90None
Male accessory glands48 44 of 4 0.90None
Virgin spermatheca28 24 of 4 0.53Down
Mated spermatheca29 14 of 4 0.54Down
Adult carcass36 54 of 4 0.70Down
Larval CNS111 264 of 4 2.04Up
Larval Salivary gland67 24 of 4 1.23Up
Larval midgut89 104 of 4 1.64Up
Larval tubule250 84 of 4 4.60Up
Larval hindgut82 24 of 4 1.52Up
Larval fat body32 14 of 4 0.60Down
Larval trachea47 84 of 4 0.87None
Larval carcass56 34 of 4 1.03None
S2 cells (growing)269 84 of 4 4.93Up
Whole fly54 34 of 4

Looking for FBgn0034346. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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