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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034351 through 18771 annotations produced 1 hits



(CG5190):

Annotation Number : CG5190
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034351
Gbrowse : chr2R:14338809-14340243 (+) // 100.0 //
Probeset : 1631614_at
Accessions : protein= NP_611335;, nucleotide= NM_137491;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infe
FlyMine data for FBgn0034351.
BDGP gene expression has embryonic in situ data for CG5190: 4 pix of staining in 1 body parts.
BioGrid reports that CG5190 interacts with CG7113 CG9511 .
TRiP has 1 RNAi stocks for FBgn0034351 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034351 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 ± 44 of 4 1.80Up
Head43 ± 34 of 4 0.80Down
Eye34 ± 14 of 4 0.66Down
Thoracicoabdominal ganglion64 ± 34 of 4 1.20Up
Salivary gland35 ± 33 of 4 0.66Down
Crop31 ± 14 of 4 0.60Down
Midgut34 ± 14 of 4 0.60Down
Tubule35 ± 24 of 4 0.70Down
Hindgut41 ± 24 of 4 0.80Down
Heart35 ± 24 of 4 0.66Down
Fat body32 ± 14 of 4 0.61Down
Ovary84 ± 64 of 4 1.60Up
Testis53 ± 34 of 4 1.00None
Male accessory glands20 ± 23 of 4 0.40Down
Virgin spermatheca14 ± 22 of 4 0.26Down
Mated spermatheca17 ± 23 of 4 0.33Down
Adult carcass36 ± 54 of 4 0.70Down
Larval CNS74 ± 24 of 4 1.39Up
Larval Salivary gland24 ± 34 of 4 0.46Down
Larval midgut29 ± 24 of 4 0.55Down
Larval tubule23 ± 14 of 4 0.40Down
Larval hindgut52 ± 24 of 4 0.98None
Larval fat body16 ± 31 of 4 0.30Down
Larval trachea66 ± 64 of 4 1.26Up
Larval carcass50 ± 74 of 4 0.95None
S2 cells (growing)38 ± 24 of 4 0.72Down
Whole fly53 ± 24 of 4

Looking for FBgn0034351. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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