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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034360 through 18771 annotations produced 1 hits



(CG10927):

Annotation Number : CG10927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034360
Gbrowse : chr2R:14500586-14501759 (+) // 100.0 //
Probeset : 1640925_at
Accessions : protein= NP_611345;, nucleotide= NM_137501;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from el
FlyMine data for FBgn0034360.
BDGP gene expression has embryonic in situ data for CG10927: 4 pix of staining in 1 body parts.
BioGrid reports that CG10927 interacts with CG33129 CG6890 CG1906 CG3225 CG6020 .
VDRC has 2 RNAi stocks for FBgn0034360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 13 of 4 0.70None
Head25 ± 22 of 4 0.70None
Eye14 ± 21 of 4 0.38Down
Thoracicoabdominal ganglion16 ± 20 of 4 0.40Down
Salivary gland22 ± 60 of 4 0.58None
Crop23 ± 22 of 4 0.60None
Midgut20 ± 23 of 4 0.50Down
Tubule20 ± 41 of 4 0.50Down
Hindgut14 ± 10 of 4 0.40Down
Heart12 ± 21 of 4 0.32Down
Fat body13 ± 80 of 4 0.35Down
Ovary78 ± 24 of 4 2.00Up
Testis13 ± 11 of 4 0.30Down
Male accessory glands61 ± 54 of 4 1.60Up
Virgin spermatheca21 ± 12 of 4 0.55Down
Mated spermatheca40 ± 34 of 4 1.06None
Adult carcass7 ± 20 of 4 0.20Down
Larval CNS21 ± 53 of 4 0.55Down
Larval Salivary gland31 ± 30 of 4 0.81None
Larval midgut22 ± 62 of 4 0.57None
Larval tubule20 ± 21 of 4 0.50Down
Larval hindgut19 ± 21 of 4 0.50Down
Larval fat body18 ± 20 of 4 0.50Down
Larval trachea16 ± 52 of 4 0.43Down
Larval carcass12 ± 40 of 4 0.31Down
S2 cells (growing)46 ± 24 of 4 1.20None
Whole fly38 ± 54 of 4

Looking for FBgn0034360. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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