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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034362 through 18771 annotations produced 1 hits



(CG5323):

Annotation Number : CG5323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034362
Gbrowse : chr2R:14502585-14503504 (+) // 100.0 //
Probeset : 1630750_at
Accessions : protein= NP_611346;, nucleotide= NM_137502;
FlyMine data for FBgn0034362.
VDRC has 2 RNAi stocks for FBgn0034362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 44 of 4 0.50Down
Head247 44 of 4 0.70Down
Eye192 44 of 4 0.51Down
Thoracicoabdominal ganglion204 64 of 4 0.50Down
Salivary gland196 104 of 4 0.52Down
Crop289 134 of 4 0.80Down
Midgut240 54 of 4 0.60Down
Tubule249 124 of 4 0.70Down
Hindgut294 84 of 4 0.80Down
Heart262 54 of 4 0.69Down
Fat body243 44 of 4 0.64Down
Ovary561 34 of 4 1.50Up
Testis341 04 of 4 0.90Down
Male accessory glands232 194 of 4 0.60Down
Virgin spermatheca295 144 of 4 0.78Down
Mated spermatheca315 44 of 4 0.84Down
Adult carcass212 64 of 4 0.60Down
Larval CNS327 194 of 4 0.87Down
Larval Salivary gland218 54 of 4 0.58Down
Larval midgut146 184 of 4 0.39Down
Larval tubule163 44 of 4 0.40Down
Larval hindgut294 234 of 4 0.78Down
Larval fat body182 124 of 4 0.50Down
Larval trachea462 634 of 4 1.22None
Larval carcass229 244 of 4 0.61Down
S2 cells (growing)482 114 of 4 1.28Up
Whole fly377 94 of 4

Looking for FBgn0034362. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime