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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034368 through 18771 annotations produced 1 hits


Annotation Number : CG5482
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034368
Gbrowse : chr2R:14517368-14519403 (-) // 100.0 //
Probeset : 1637676_at
Accessions : protein= NP_611353;, nucleotide= NM_137509;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from sequence or structural similarity /// 0003755 /
FlyMine data for FBgn0034368.
BDGP gene expression has embryonic in situ data for CG5482: 4 pix of staining in 1 body parts.
Homophila reports that CG5482 is a close match (3e-14) to human gene FKBP5;FKBP51 (NP_004108), a gene associated with {Major depressive disorder and accelerated response to antidepressant drug treatment}, 608516 (3).
BioGrid reports that CG5482 interacts with CG7574 .
VDRC has 3 RNAi stocks for FBgn0034368 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 44 of 4 0.70Down
Head342 164 of 4 0.90None
Eye182 64 of 4 0.50Down
Thoracicoabdominal ganglion249 124 of 4 0.70Down
Salivary gland387 54 of 4 1.07None
Crop1089 354 of 4 3.00Up
Midgut396 144 of 4 1.10None
Tubule401 94 of 4 1.10Up
Hindgut584 104 of 4 1.60Up
Heart1121 804 of 4 3.10Up
Fat body1251 1164 of 4 3.46Up
Ovary328 84 of 4 0.90None
Testis881 274 of 4 2.40Up
Male accessory glands293 174 of 4 0.80None
Virgin spermatheca387 574 of 4 1.07None
Mated spermatheca428 204 of 4 1.18None
Adult carcass889 594 of 4 2.50Up
Larval CNS315 394 of 4 0.87None
Larval Salivary gland467 324 of 4 1.29Up
Larval midgut410 74 of 4 1.13None
Larval tubule866 244 of 4 2.40Up
Larval hindgut475 74 of 4 1.31Up
Larval fat body955 374 of 4 2.60Up
Larval trachea432 424 of 4 1.19None
Larval carcass506 224 of 4 1.40Up
S2 cells (growing)533 64 of 4 1.48Up
Whole fly361 214 of 4

Looking for FBgn0034368. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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