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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034372 through 18771 annotations produced 1 hits



/// GDI interacting protein 3 (CG42306 /// Gint3):

Annotation Number : CG5469
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034372 /// FBgn0259202
Gbrowse : chr2R:14545919-14549053 (-) // 100.0 //
Probeset : 1626177_s_at
Accessions : protein= NP_001137700; /// NP_001137701; /// NP_611356; /// NP_725812; /// NP_725813;, nucleotide= NM_001144228; /// NM_001144229; /// NM_137512; /// NM_166301; /// NM_166302;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034372 /// FBgn0259202.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 ± 104 of 4 1.30Up
Head326 ± 24 of 4 1.10None
Eye515 ± 274 of 4 1.69Up
Thoracicoabdominal ganglion503 ± 114 of 4 1.70Up
Salivary gland814 ± 134 of 4 2.67Up
Crop401 ± 144 of 4 1.30Up
Midgut516 ± 164 of 4 1.70Up
Tubule479 ± 294 of 4 1.60Up
Hindgut420 ± 64 of 4 1.40Up
Heart293 ± 134 of 4 0.96None
Fat body329 ± 184 of 4 1.08None
Ovary288 ± 34 of 4 0.90None
Testis893 ± 184 of 4 2.90Up
Male accessory glands468 ± 184 of 4 1.50Up
Virgin spermatheca444 ± 124 of 4 1.46Up
Mated spermatheca437 ± 44 of 4 1.43Up
Adult carcass324 ± 114 of 4 1.10None
Larval CNS365 ± 154 of 4 1.20Up
Larval Salivary gland680 ± 254 of 4 2.23Up
Larval midgut728 ± 114 of 4 2.39Up
Larval tubule872 ± 174 of 4 2.90Up
Larval hindgut428 ± 164 of 4 1.41Up
Larval fat body421 ± 164 of 4 1.40Up
Larval trachea287 ± 164 of 4 0.94None
Larval carcass408 ± 294 of 4 1.34Up
S2 cells (growing)727 ± 144 of 4 2.39Up
Whole fly305 ± 164 of 4

Looking for FBgn0034372. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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