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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034377 through 18771 annotations produced 1 hits


Annotation Number : CG15071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034377
Gbrowse : chr2R:14584138-14584759 (+) // 100.0 //
Probeset : 1634431_at
Accessions : protein= NP_611360;, nucleotide= NM_137516;
FlyMine data for FBgn0034377.
BioGrid reports that CG15071 interacts with CG15071 CG2216 CG4443 CG6156 CG8604 CG15764 CG17143 CG17957 CG3060 CG3610 CG4568 CG4843 CG5050 CG6033 CG7231 CG8368 CG8640 CG9188 CG9902 CG9911 CG9951 CG9986 .

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 24 of 4 1.00None
Head7 11 of 4 0.80None
Eye1 00 of 4 0.20Down
Thoracicoabdominal ganglion9 14 of 4 1.10None
Salivary gland20 42 of 4 2.30None
Crop9 11 of 4 1.10None
Midgut7 12 of 4 0.80None
Tubule10 00 of 4 1.20Up
Hindgut9 03 of 4 1.10None
Heart4 10 of 4 0.48Down
Fat body12 43 of 4 1.48None
Ovary3 11 of 4 0.40Down
Testis45 44 of 4 5.30Up
Male accessory glands7 11 of 4 0.90None
Virgin spermatheca7 02 of 4 0.81None
Mated spermatheca8 13 of 4 1.02None
Adult carcass12 32 of 4 1.40None
Larval CNS7 14 of 4 0.82None
Larval Salivary gland11 13 of 4 1.37None
Larval midgut7 11 of 4 0.82None
Larval tubule8 20 of 4 1.00None
Larval hindgut7 13 of 4 0.87None
Larval fat body19 31 of 4 2.20None
Larval trachea3 20 of 4 0.41Down
Larval carcass7 20 of 4 0.91None
S2 cells (growing)7 03 of 4 0.85None
Whole fly8 02 of 4

Looking for FBgn0034377. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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