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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034377 through 18771 annotations produced 1 hits



(CG15071):

Annotation Number : CG15071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034377
Gbrowse : chr2R:14584138-14584759 (+) // 100.0 //
Probeset : 1634431_at
Accessions : protein= NP_611360;, nucleotide= NM_137516;
FlyMine data for FBgn0034377.
BioGrid reports that CG15071 interacts with CG15071 CG2216 CG4443 CG6156 CG8604 CG15764 CG17143 CG17957 CG3060 CG3610 CG4568 CG4843 CG5050 CG6033 CG7231 CG8368 CG8640 CG9188 CG9902 CG9911 CG9951 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 24 of 4 1.00None
Head7 ± 11 of 4 0.80None
Eye1 ± 00 of 4 0.20Down
Thoracicoabdominal ganglion9 ± 14 of 4 1.10None
Salivary gland20 ± 42 of 4 2.30None
Crop9 ± 11 of 4 1.10None
Midgut7 ± 12 of 4 0.80None
Tubule10 ± 00 of 4 1.20Up
Hindgut9 ± 03 of 4 1.10None
Heart4 ± 10 of 4 0.48Down
Fat body12 ± 43 of 4 1.48None
Ovary3 ± 11 of 4 0.40Down
Testis45 ± 44 of 4 5.30Up
Male accessory glands7 ± 11 of 4 0.90None
Virgin spermatheca7 ± 02 of 4 0.81None
Mated spermatheca8 ± 13 of 4 1.02None
Adult carcass12 ± 32 of 4 1.40None
Larval CNS7 ± 14 of 4 0.82None
Larval Salivary gland11 ± 13 of 4 1.37None
Larval midgut7 ± 11 of 4 0.82None
Larval tubule8 ± 20 of 4 1.00None
Larval hindgut7 ± 13 of 4 0.87None
Larval fat body19 ± 31 of 4 2.20None
Larval trachea3 ± 20 of 4 0.41Down
Larval carcass7 ± 20 of 4 0.91None
S2 cells (growing)7 ± 03 of 4 0.85None
Whole fly8 ± 02 of 4

Looking for FBgn0034377. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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