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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034379 through 18771 annotations produced 1 hits



(CG15073):

Annotation Number : CG15073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034379
Gbrowse : chr2R:14593486-14595728 (+) // 100.0 //
Probeset : 1627132_at
Accessions : protein= NP_611362;, nucleotide= NM_137518;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0034379.
Homophila reports that CG15073 is a close match (1e-11) to human gene GFI1;ZNF163 (NP_005254), a gene associated with Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3);Neutropenia, severe congenital, 202700 (3).
BioGrid reports that CG15073 interacts with CG5303 CG8319 .
TRiP has 1 RNAi stocks for FBgn0034379 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 34 of 4 1.70Up
Head45 24 of 4 0.90None
Eye65 34 of 4 1.34Up
Thoracicoabdominal ganglion73 54 of 4 1.50Up
Salivary gland48 44 of 4 0.99None
Crop62 14 of 4 1.30Up
Midgut37 34 of 4 0.80Down
Tubule25 14 of 4 0.50Down
Hindgut50 24 of 4 1.00None
Heart39 14 of 4 0.80Down
Fat body44 34 of 4 0.90None
Ovary77 34 of 4 1.60Up
Testis72 14 of 4 1.50Up
Male accessory glands54 34 of 4 1.10None
Virgin spermatheca38 34 of 4 0.79None
Mated spermatheca40 24 of 4 0.82Down
Adult carcass36 34 of 4 0.70Down
Larval CNS74 94 of 4 1.52Up
Larval Salivary gland43 44 of 4 0.88None
Larval midgut46 14 of 4 0.94None
Larval tubule47 24 of 4 1.00None
Larval hindgut36 24 of 4 0.75Down
Larval fat body61 74 of 4 1.30None
Larval trachea59 44 of 4 1.22Up
Larval carcass42 14 of 4 0.88None
S2 cells (growing)45 14 of 4 0.93None
Whole fly49 24 of 4

Looking for FBgn0034379. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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