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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034381 through 18771 annotations produced 3 hits



(CG15088):

Annotation Number : CG15088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034381
Gbrowse : chr2R:14615451-14617763 (-) // 100.0 //
Probeset : 1636594_at
Accessions : protein= NP_611364; /// NP_788408;, nucleotide= NM_137520; /// NM_176228;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0034381.
Homophila reports that CG15088 is a close match (4e-66) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0034381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain227 104 of 417.00Up
Head65 54 of 4 4.90Up
Eye67 34 of 4 5.00Up
Thoracicoabdominal ganglion367 144 of 427.40Up
Salivary gland5 30 of 4 0.44None
Crop1 00 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule918 594 of 468.40Up
Hindgut246 184 of 418.40Up
Heart1 00 of 4 0.14Down
Fat body1 00 of 4 0.07Down
Ovary0 00 of 4 0.10Down
Testis3 10 of 4 0.20Down
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.25Down
Mated spermatheca3 20 of 4 0.26Down
Adult carcass1 00 of 4 0.10Down
Larval CNS28 44 of 4 2.10Up
Larval Salivary gland2 10 of 4 0.16Down
Larval midgut1 00 of 4 0.13Down
Larval tubule124 204 of 4 9.30Up
Larval hindgut41 34 of 4 3.07Up
Larval fat body1 00 of 4 0.10Down
Larval trachea2 30 of 4 0.21Down
Larval carcass6 10 of 4 0.46Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly13 22 of 4



(CG15088):

Annotation Number : CG15088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034381
Gbrowse : chr2R:14615659-14617763 (-) // 100.0 //
Probeset : 1632986_a_at
Accessions : protein= NP_611364; /// NP_788408;, nucleotide= NM_137520; /// NM_176228;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0034381.
Homophila reports that CG15088 is a close match (4e-66) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0034381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain229 24 of 413.70Up
Head73 54 of 4 4.30Up
Eye34 24 of 4 2.04Up
Thoracicoabdominal ganglion236 124 of 414.10Up
Salivary gland7 20 of 4 0.44None
Crop2 10 of 4 0.10Down
Midgut0 00 of 4 0.10Down
Tubule409 224 of 424.40Up
Hindgut267 144 of 415.90Up
Heart3 00 of 4 0.18Down
Fat body3 40 of 4 0.18Down
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands3 30 of 4 0.20Down
Virgin spermatheca0 00 of 4 0.04Down
Mated spermatheca0 00 of 4 0.04Down
Adult carcass5 40 of 4 0.30None
Larval CNS25 44 of 4 1.53None
Larval Salivary gland3 10 of 4 0.22Down
Larval midgut1 00 of 4 0.06Down
Larval tubule101 114 of 4 6.00Up
Larval hindgut36 34 of 4 2.20Up
Larval fat body0 00 of 4 0.00Down
Larval trachea1 10 of 4 0.12Down
Larval carcass4 10 of 4 0.25Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly16 34 of 4



(CG15088):

Annotation Number : CG15088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034381
Gbrowse : chr2R:14615659-14617763 (-) // 100.0 //
Probeset : 1626311_at
Accessions : protein= NP_611364; /// NP_788408;, nucleotide= NM_137520; /// NM_176228;
Pathway : 0005887 // integral to plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from e
Interpro : 0005326 // neurotransmitter transporter activity // inferred from sequence or structural similarity /// 0005328 // neuro
FlyMine data for FBgn0034381.
Homophila reports that CG15088 is a close match (4e-66) to human gene HND;SLC6A19 (NP_001003841), a gene associated with Hartnup disorder, 234500 (3).
VDRC has 2 RNAi stocks for FBgn0034381 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 14 of 4 4.90Up
Head5 11 of 4 0.90None
Eye8 01 of 4 1.57None
Thoracicoabdominal ganglion27 14 of 4 5.00Up
Salivary gland21 50 of 4 3.90None
Crop6 10 of 4 1.20None
Midgut6 20 of 4 1.10None
Tubule38 64 of 4 7.10Up
Hindgut23 14 of 4 4.30Up
Heart1 00 of 4 0.28Down
Fat body9 31 of 4 1.65None
Ovary1 00 of 4 0.30Down
Testis1 00 of 4 0.20Down
Male accessory glands5 20 of 4 1.10None
Virgin spermatheca1 00 of 4 0.30Down
Mated spermatheca6 20 of 4 1.14None
Adult carcass4 10 of 4 0.70None
Larval CNS9 24 of 4 1.80Up
Larval Salivary gland4 10 of 4 0.75None
Larval midgut3 10 of 4 0.57None
Larval tubule18 33 of 4 3.40Up
Larval hindgut9 10 of 4 1.80None
Larval fat body5 20 of 4 1.00None
Larval trachea4 20 of 4 0.78None
Larval carcass2 00 of 4 0.37None
S2 cells (growing)4 10 of 4 0.80None
Whole fly5 10 of 4

Looking for FBgn0034381. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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