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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034382 through 18771 annotations produced 1 hits


(CG18609):

Annotation Number : CG18609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034382
Gbrowse : chr2R:14630167-14631121 (-) // 100.0 //
Probeset : 1640006_at
Accessions : protein= NP_611365;, nucleotide= NM_137521;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0034382.
BDGP gene expression has embryonic in situ data for CG18609: 13 pix of staining in 2 body parts.
Homophila reports that CG18609 is a close match (7e-30) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 2 RNAi stocks for FBgn0034382 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head6 ± 02 of 4 0.00Down
Eye3 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion13 ± 92 of 4 0.00Down
Salivary gland13 ± 31 of 4 0.05Down
Crop7 ± 22 of 4 0.00Down
Midgut5 ± 10 of 4 0.00Down
Tubule18 ± 72 of 4 0.10Down
Hindgut9 ± 23 of 4 0.00Down
Heart3560 ± 844 of 413.15Up
Fat body2985 ± 3734 of 411.03Up
Ovary2 ± 00 of 4 0.00Down
Testis40 ± 34 of 4 0.10Down
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca15 ± 14 of 4 0.06Down
Mated spermatheca15 ± 34 of 4 0.06Down
Adult carcass2240 ± 1444 of 4 8.30Up
Larval CNS2 ± 11 of 4 0.01Down
Larval Salivary gland2 ± 11 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.02Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.01Down
Larval fat body6 ± 31 of 4 0.00Down
Larval trachea5 ± 22 of 4 0.02Down
Larval carcass79 ± 114 of 4 0.29Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly270 ± 114 of 4

Looking for FBgn0034382. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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