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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034387 through 18771 annotations produced 1 hits



Cyp12b2 (Cyp12b2):

Annotation Number : CG15077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034387
Gbrowse : chr2R:14642627-14644542 (+) // 100.0 //
Probeset : 1630170_at
Accessions : protein= NP_611370;, nucleotide= NM_137526;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005739 // mitochondrion // non-traceabl
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0034387.
Homophila reports that CG15077 is a close match (1e-12) to human gene CPD6;CYP2D6;P450DB1 (NP_001020332), a gene associated with Codeine sensitivity (3);Debrisoquine sensitivity (3);{?Parkinsonism, susceptibility to} (1).
VDRC has 2 RNAi stocks for FBgn0034387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain173 ± 84 of 4 3.40Up
Head191 ± 154 of 4 3.80Up
Eye117 ± 54 of 4 2.32Up
Thoracicoabdominal ganglion257 ± 154 of 4 5.10Up
Salivary gland129 ± 74 of 4 2.55Up
Crop160 ± 134 of 4 3.20Up
Midgut73 ± 24 of 4 1.40Up
Tubule76 ± 34 of 4 1.50Up
Hindgut105 ± 64 of 4 2.10Up
Heart99 ± 34 of 4 1.96Up
Fat body214 ± 424 of 4 4.23Up
Ovary3 ± 00 of 4 0.10Down
Testis13 ± 04 of 4 0.30Down
Male accessory glands41 ± 44 of 4 0.80None
Virgin spermatheca130 ± 84 of 4 2.57Up
Mated spermatheca202 ± 164 of 4 4.00Up
Adult carcass229 ± 104 of 4 4.50Up
Larval CNS36 ± 74 of 4 0.71Down
Larval Salivary gland17 ± 24 of 4 0.35Down
Larval midgut53 ± 34 of 4 1.06None
Larval tubule103 ± 34 of 4 2.00Up
Larval hindgut83 ± 44 of 4 1.64Up
Larval fat body11 ± 22 of 4 0.20Down
Larval trachea16 ± 54 of 4 0.32Down
Larval carcass74 ± 94 of 4 1.47None
S2 cells (growing)20 ± 14 of 4 0.41Down
Whole fly50 ± 24 of 4

Looking for FBgn0034387. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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