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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034389 through 18771 annotations produced 2 hits



Multiple C2 domain and transmembrane region protein (Mctp):

Annotation Number : CG33148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034389
Gbrowse : chr2R:14655586-14658132 (+) // 100.0 //
Probeset : 1634175_at
Accessions : protein= NP_001036560; /// NP_611372;, nucleotide= NM_001043095; /// NM_137528;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0034389.
VDRC has 3 RNAi stocks for FBgn0034389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 02 of 4 4.50Up
Head2 00 of 4 1.00None
Eye0 00 of 4 0.16None
Thoracicoabdominal ganglion5 10 of 4 2.20None
Salivary gland1 00 of 4 0.59None
Crop1 00 of 4 0.50None
Midgut2 10 of 4 1.10None
Tubule1 00 of 4 0.60Down
Hindgut1 00 of 4 0.40None
Heart0 00 of 4 0.28None
Fat body0 00 of 4 0.39None
Ovary1 00 of 4 0.50None
Testis2 00 of 4 0.80None
Male accessory glands0 00 of 4 0.30None
Virgin spermatheca0 00 of 4 0.24None
Mated spermatheca0 00 of 4 0.32None
Adult carcass6 30 of 4 2.80None
Larval CNS1 00 of 4 0.45None
Larval Salivary gland3 10 of 4 1.43None
Larval midgut1 00 of 4 0.60None
Larval tubule1 00 of 4 0.50None
Larval hindgut0 00 of 4 0.25None
Larval fat body10 10 of 4 4.50Up
Larval trachea0 00 of 4 0.27None
Larval carcass0 00 of 4 0.29None
S2 cells (growing)1 00 of 4 0.42None
Whole fly2 00 of 4



Multiple C2 domain and transmembrane region protein (Mctp):

Annotation Number : CG33146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034389
Gbrowse : chr2R:14658993-14662174 (+) // 100.0 //
Probeset : 1633447_at
Accessions : protein= NP_001036560; /// NP_611372;, nucleotide= NM_001043095; /// NM_137528;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0034389.
VDRC has 3 RNAi stocks for FBgn0034389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain369 84 of 4 2.80Up
Head169 74 of 4 1.30Up
Eye112 84 of 4 0.85None
Thoracicoabdominal ganglion366 104 of 4 2.80Up
Salivary gland143 54 of 4 1.08None
Crop299 114 of 4 2.30Up
Midgut76 14 of 4 0.60Down
Tubule14 23 of 4 0.10Down
Hindgut232 104 of 4 1.80Up
Heart105 74 of 4 0.79Down
Fat body96 224 of 4 0.73Down
Ovary280 94 of 4 2.10Up
Testis10 04 of 4 0.10Down
Male accessory glands71 04 of 4 0.50Down
Virgin spermatheca76 74 of 4 0.58Down
Mated spermatheca82 44 of 4 0.62Down
Adult carcass95 34 of 4 0.70Down
Larval CNS102 124 of 4 0.78Down
Larval Salivary gland30 34 of 4 0.23Down
Larval midgut48 44 of 4 0.37Down
Larval tubule5 00 of 4 0.00Down
Larval hindgut145 54 of 4 1.10None
Larval fat body461 614 of 4 3.50Up
Larval trachea33 24 of 4 0.25Down
Larval carcass12 04 of 4 0.10Down
S2 cells (growing)508 194 of 4 3.84Up
Whole fly132 74 of 4

Looking for FBgn0034389. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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