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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0034398 through 18771 annotations produced 1 hits


Annotation Number : CG15098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034398
Gbrowse : chr2R:14721023-14722260 (-) // 100.0 //
Probeset : 1627634_at
Accessions : protein= NP_611379;, nucleotide= NM_137535;
FlyMine data for FBgn0034398.
BioGrid reports that CG15098 interacts with CG3379 .
VDRC has 1 RNAi stocks for FBgn0034398 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain989 214 of 4 0.80Down
Head1974 724 of 4 1.60Up
Eye2275 924 of 4 1.88Up
Thoracicoabdominal ganglion959 204 of 4 0.80Down
Salivary gland4362 1084 of 4 3.61Up
Crop2665 784 of 4 2.20Up
Midgut3076 484 of 4 2.50Up
Tubule2857 324 of 4 2.40Up
Hindgut2707 244 of 4 2.20Up
Heart3474 2294 of 4 2.88Up
Fat body2588 1674 of 4 2.14Up
Ovary934 174 of 4 0.80Down
Testis533 144 of 4 0.40Down
Male accessory glands2892 1074 of 4 2.40Up
Virgin spermatheca1520 624 of 4 1.26Up
Mated spermatheca1416 1194 of 4 1.17None
Adult carcass2198 774 of 4 1.80Up
Larval CNS750 774 of 4 0.62Down
Larval Salivary gland2809 804 of 4 2.33Up
Larval midgut2120 694 of 4 1.76Up
Larval tubule4700 684 of 4 3.90Up
Larval hindgut2212 384 of 4 1.83Up
Larval fat body5619 6374 of 4 4.70Up
Larval trachea2578 2504 of 4 2.14Up
Larval carcass1493 1504 of 4 1.24None
S2 cells (growing)3647 564 of 4 3.02Up
Whole fly1207 744 of 4

Looking for FBgn0034398. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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