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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034399 through 18771 annotations produced 1 hits



(CG15083):

Annotation Number : CG15083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034399
Gbrowse : chr2R:14722765-14724347 (+) // 100.0 //
Probeset : 1636505_at
Accessions : protein= NP_611380;, nucleotide= NM_137536;
FlyMine data for FBgn0034399.
BioGrid reports that CG15083 interacts with CG17568 .
VDRC has 2 RNAi stocks for FBgn0034399 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 44 of 4 0.10Down
Head445 ± 144 of 4 1.30Up
Eye668 ± 304 of 4 1.95Up
Thoracicoabdominal ganglion60 ± 24 of 4 0.20Down
Salivary gland552 ± 194 of 4 1.61Up
Crop1341 ± 314 of 4 3.90Up
Midgut173 ± 74 of 4 0.50Down
Tubule187 ± 234 of 4 0.50Down
Hindgut1192 ± 204 of 4 3.50Up
Heart549 ± 344 of 4 1.60Up
Fat body397 ± 224 of 4 1.16Up
Ovary549 ± 154 of 4 1.60Up
Testis147 ± 44 of 4 0.40Down
Male accessory glands1449 ± 474 of 4 4.20Up
Virgin spermatheca390 ± 234 of 4 1.14None
Mated spermatheca468 ± 294 of 4 1.37Up
Adult carcass422 ± 54 of 4 1.20Up
Larval CNS204 ± 384 of 4 0.60Down
Larval Salivary gland762 ± 564 of 4 2.23Up
Larval midgut213 ± 114 of 4 0.62Down
Larval tubule545 ± 374 of 4 1.60Up
Larval hindgut1275 ± 84 of 4 3.73Up
Larval fat body534 ± 384 of 4 1.60Up
Larval trachea2103 ± 2404 of 4 6.14Up
Larval carcass1229 ± 744 of 4 3.59Up
S2 cells (growing)1681 ± 124 of 4 4.91Up
Whole fly342 ± 84 of 4

Looking for FBgn0034399. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime