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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034401 through 18771 annotations produced 1 hits



(CG15100):

Annotation Number : CG15100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034401
Gbrowse : chr2R:14734362-14738184 (-) // 100.0 //
Probeset : 1630677_at
Accessions : protein= NP_611382;, nucleotide= NM_137538;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred fr
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0034401.
VDRC has 3 RNAi stocks for FBgn0034401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 74 of 4 0.80None
Head143 44 of 4 0.50Down
Eye192 264 of 4 0.66Down
Thoracicoabdominal ganglion331 214 of 4 1.10None
Salivary gland267 134 of 4 0.91None
Crop243 14 of 4 0.80None
Midgut163 54 of 4 0.60Down
Tubule192 184 of 4 0.70Down
Hindgut171 94 of 4 0.60Down
Heart144 184 of 4 0.49Down
Fat body150 314 of 4 0.51Down
Ovary531 204 of 4 1.80Up
Testis465 224 of 4 1.60Up
Male accessory glands389 234 of 4 1.30Up
Virgin spermatheca353 34 of 4 1.21None
Mated spermatheca533 414 of 4 1.82Up
Adult carcass116 94 of 4 0.40Down
Larval CNS606 594 of 4 2.07Up
Larval Salivary gland727 244 of 4 2.48Up
Larval midgut183 124 of 4 0.63Down
Larval tubule219 64 of 4 0.80None
Larval hindgut268 164 of 4 0.92None
Larval fat body247 374 of 4 0.80None
Larval trachea320 584 of 4 1.09None
Larval carcass432 374 of 4 1.48Up
S2 cells (growing)634 64 of 4 2.17Up
Whole fly292 244 of 4

Looking for FBgn0034401. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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